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We present a novel graph-based machine learning classifier for identifying the dark matter cosmic web environments of galaxies. Large galaxy surveys offer comprehensive statistical views of how galaxy properties are shaped by large-scale…

星系天体物理 · 物理学 2026-04-02 Dakshesh Kololgi , Krishna Naidoo , Amelie Saintonge , Ofer Lahav

Graph neural networks (GNNs) demonstrate great performance in compound property and activity prediction due to their capability to efficiently learn complex molecular graph structures. However, two main limitations persist including…

生物大分子 · 定量生物学 2023-10-10 Apakorn Kengkanna , Masahito Ohue

The Large Hadron Collider at CERN produces immense volumes of complex data from high-energy particle collisions, demanding sophisticated analytical techniques for effective interpretation. Neural Networks, including Graph Neural Networks,…

Machine learning models of materials$^{1-5}$ accelerate discovery compared to ab initio methods: deep learning models now reproduce density functional theory (DFT)-calculated results at one hundred thousandths of the cost of DFT$^{6}$. To…

Human brains lie at the core of complex neurobiological systems, where the neurons, circuits, and subsystems interact in enigmatic ways. Understanding the structural and functional mechanisms of the brain has long been an intriguing pursuit…

神经元与认知 · 定量生物学 2022-07-26 Hejie Cui , Wei Dai , Yanqiao Zhu , Xiaoxiao Li , Lifang He , Carl Yang

Most Graph Neural Networks (GNNs) predict the labels of unseen graphs by learning the correlation between the input graphs and labels. However, by presenting a graph classification investigation on the training graphs with severe bias,…

机器学习 · 计算机科学 2022-09-29 Shaohua Fan , Xiao Wang , Yanhu Mo , Chuan Shi , Jian Tang

Graph Neural Networks have rapidly advanced in materials science and chemistry,with their performance critically dependent on comprehensive representations of crystal or molecular structures across five dimensions: elemental information,…

材料科学 · 物理学 2025-09-09 Hongwei Du , Hong Wang

The success of recent deep convolutional neural networks (CNNs) depends on learning hidden representations that can summarize the important factors of variation behind the data. However, CNNs often criticized as being black boxes that lack…

计算机视觉与模式识别 · 计算机科学 2018-06-27 Bolei Zhou , David Bau , Aude Oliva , Antonio Torralba

Graphs are a fundamental abstraction for modeling relational data. However, graphs are discrete and combinatorial in nature, and learning representations suitable for machine learning tasks poses statistical and computational challenges. In…

机器学习 · 统计学 2019-05-16 Aditya Grover , Aaron Zweig , Stefano Ermon

Reticular materials, including metal-organic frameworks and covalent organic frameworks, combine relative ease of synthesis and an impressive range of applications in various fields, from gas storage to biomedicine. Diverse properties arise…

材料科学 · 物理学 2024-03-11 Vadim Korolev , Artem Mitrofanov

Encoding whole slide images (WSI) as graphs is well motivated since it makes it possible for the gigapixel resolution WSI to be represented in its entirety for the purpose of graph learning. To this end, WSIs can be broken into smaller…

图像与视频处理 · 电气工程与系统科学 2023-06-16 Milan Aryal , Nasim Yahyasoltani

Optical properties in solids, such as refractive index and absorption, hold vast applications ranging from solar panels to sensors, photodetectors, and transparent displays. However, first-principles computation of optical properties from…

材料科学 · 物理学 2024-06-25 Nguyen Tuan Hung , Ryotaro Okabe , Abhijatmedhi Chotrattanapituk , Mingda Li

With the rapid growth of graph-structured data in critical domains, unsupervised graph-level anomaly detection (UGAD) has become a pivotal task. UGAD seeks to identify entire graphs that deviate from normal behavioral patterns. However,…

机器学习 · 计算机科学 2025-11-07 Qingfeng Chen , Haojin Zeng , Jingyi Jie , Shichao Zhang , Debo Cheng

The graph classification problem has been widely studied; however, achieving an interpretable model with high predictive performance remains a challenging issue. This paper proposes an interpretable classification algorithm for attributed…

机器学习 · 计算机科学 2024-02-13 Tajima Shinji , Ren Sugihara , Ryota Kitahara , Masayuki Karasuyama

Despite remarkable success in diverse web-based applications, Graph Neural Networks(GNNs) inherit and further exacerbate historical discrimination and social stereotypes, which critically hinder their deployments in high-stake domains such…

机器学习 · 计算机科学 2025-01-28 Ying Song , Balaji Palanisamy

Development of next-generation electronic devices for applications call for the discovery of quantum materials hosting novel electronic, magnetic, and topological properties. Traditional electronic structure methods require expensive…

计算物理 · 物理学 2020-05-28 Hexin Bai , Peng Chu , Jeng-Yuan Tsai , Nathan Wilson , Xiaofeng Qian , Qimin Yan , Haibin Ling

Predicting relaxed atomic structures of chemically complex materials remains a major computational challenge, particularly for high-entropy systems where traditional first-principles methods become prohibitively expensive. We introduce the…

无序系统与神经网络 · 物理学 2025-12-09 Neethu Mohan Mangalassery , Abhishek Kumar Singh

The great tunability of the properties of halide perovskites presents new opportunities for optoelectronic applications as well as significant challenges associated with exploring combinatorial chemical spaces. In this work, we develop a…

材料科学 · 物理学 2021-09-23 Arun Mannodi-Kanakkithodi , Maria K. Y. Chan

The lack of interpretability and trust is a much-criticised feature of deep neural networks. In fully connected nets, the signalling between inner layers is scrambled because backpropagation training does not require perceptrons to be…

信号处理 · 电气工程与系统科学 2021-01-28 Jake L. Amey , Jake Keeley , Tajwar Choudhury , Ilya Kuprov

A central goal in understanding human vision is to uncover the visual features that drive neuronal activity. A growing body of work has used artificial neural networks as encoding models to predict cortical responses to natural images,…

计算机视觉与模式识别 · 计算机科学 2026-05-19 Idan Daniel Grosbard , Mor Geva , Galit Yovel