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We introduce a novel gene regulatory network (GRN) inference method that integrates optimal transport (OT) with a deep-learning structural inference model. Advances in next-generation sequencing enable detailed yet destructive gene…

计算工程、金融与科学 · 计算机科学 2024-09-24 Tsz Pan Tong , Aoran Wang , George Panagopoulos , Jun Pang

We introduce a framework for analyzing topological tipping in time-evolutionary point clouds by extending the recently proposed Topological Optimal Transport (TpOT) distance. While TpOT unifies geometric, homological, and higher-order…

机器学习 · 统计学 2026-03-18 Yixin Wang , Ting Gao , Jinqiao Duan

Clustering is a fundamental task in the computer vision and machine learning community. Although various methods have been proposed, the performance of existing approaches drops dramatically when handling incomplete high-dimensional data…

计算机视觉与模式识别 · 计算机科学 2021-03-23 Mingjie Luo , Siwei Wang , Xinwang Liu , Wenxuan Tu , Yi Zhang , Xifeng Guo , Sihang Zhou , En Zhu

Comparing unpaired samples of a distribution or population taken at different points in time is a fundamental task in many application domains where measuring populations is destructive and cannot be done repeatedly on the same sample, such…

The objective in statistical Optimal Transport (OT) is to consistently estimate the optimal transport plan/map solely using samples from the given source and target marginal distributions. This work takes the novel approach of posing…

机器学习 · 计算机科学 2020-11-11 J. Saketha Nath , Pratik Jawanpuria

We propose and study a method called FLOT that estimates scene flow on point clouds. We start the design of FLOT by noticing that scene flow estimation on point clouds reduces to estimating a permutation matrix in a perfect world. Inspired…

计算机视觉与模式识别 · 计算机科学 2020-07-23 Gilles Puy , Alexandre Boulch , Renaud Marlet

Unsupervised change detection between airborne LiDAR data points, taken at separate times over the same location, can be difficult due to unmatching spatial support and noise from the acquisition system. Most current approaches to detect…

计算机视觉与模式识别 · 计算机科学 2023-11-09 Marco Fiorucci , Peter Naylor , Makoto Yamada

Unsupervised action segmentation has recently pushed its limits with ASOT, an optimal transport (OT)-based method that simultaneously learns action representations and performs clustering using pseudo-labels. Unlike other OT-based…

计算机视觉与模式识别 · 计算机科学 2025-08-08 Elena Bueno-Benito , Mariella Dimiccoli

Entity alignment aims to discover unique equivalent entity pairs with the same meaning across different knowledge graphs (KGs). Existing models have focused on projecting KGs into a latent embedding space so that inherent semantics between…

机器学习 · 计算机科学 2025-06-03 Qijie Ding , Daokun Zhang , Jie Yin

The rapid emergence of single-cell data has facilitated the study of many different biological conditions at the cellular level. Cluster analysis has been widely applied to identify cell types, capturing the essential patterns of the…

基因组学 · 定量生物学 2025-02-03 Sebastian Pena , Lin Lin , Jia Li

Causal abstraction offers a principled framework for mechanistic interpretability, aligning a high-level causal model with the low-level computation realized by a neural network through counterfactual intervention analysis. Existing methods…

机器学习 · 计算机科学 2026-05-11 Jonathn Chang , Arya Datla , Ziv Goldfeld

Hyperbolic-spaces are better suited to represent data with underlying hierarchical relationships, e.g., tree-like data. However, it is often necessary to incorporate, through alignment, different but related representations meaningfully.…

机器学习 · 统计学 2020-12-03 Andrés Hoyos-Idrobo

Conditional Optimal Transport (COT) problem aims to find a transport map between conditional source and target distributions while minimizing the transport cost. Recently, these transport maps have been utilized in conditional generative…

机器学习 · 计算机科学 2026-03-13 Jiwoo Yoon , Kyumin Choi , Jaewoong Choi

LiDAR sensors are an integral part of modern autonomous vehicles as they provide an accurate, high-resolution 3D representation of the vehicle's surroundings. However, it is computationally difficult to make use of the ever-increasing…

计算机视觉与模式识别 · 计算机科学 2023-05-16 Marc Uecker , Tobias Fleck , Marcel Pflugfelder , J. Marius Zöllner

The power and flexibility of Optimal Transport (OT) have pervaded a wide spectrum of problems, including recent Machine Learning challenges such as unsupervised domain adaptation. Its essence of quantitatively relating two probability…

图像与视频处理 · 电气工程与系统科学 2023-04-18 Bo Jiang , Hamid Krim , Tianfu Wu , Derya Cansever

Unbalanced optimal transport (UOT) provides a principled framework for modeling single-cell transitions and birth-death dynamics, but its high computational cost limits scalability to large-scale datasets. Although single-cell data often…

机器学习 · 计算机科学 2026-05-19 Qiangwei Peng , Lezhi Chen , Peijie Zhou

Distributional data have become increasingly prominent in modern signal processing, highlighting the necessity of computing optimal transport (OT) maps across multiple probability distributions. Nevertheless, recent studies on neural OT…

机器学习 · 计算机科学 2025-04-25 Mingchen Jiang , Peng Xu , Xichen Ye , Xiaohui Chen , Yun Yang , Yifan Chen

Current LiDAR point cloud-based 3D single object tracking (SOT) methods typically rely on point-based representation network. Despite demonstrated success, such networks suffer from some fundamental problems: 1) It contains pooling…

计算机视觉与模式识别 · 计算机科学 2024-08-06 Yuxuan Lu , Jiahao Nie , Zhiwei He , Hongjie Gu , Xudong Lv

Flow-matching models have recently emerged as a powerful framework for continuous generative modeling, including 3D point cloud synthesis. However, their deployment is limited by the need for multiple sequential sampling steps at inference…

Out-of-distribution (OOD) data poses serious challenges in deployed machine learning models, so methods of predicting a model's performance on OOD data without labels are important for machine learning safety. While a number of methods have…