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This work introduces a number of algebraic topology approaches, such as multicomponent persistent homology, multi-level persistent homology and electrostatic persistence for the representation, characterization, and description of small…

定量方法 · 定量生物学 2018-02-07 Zixuan Cang , Lin Mu , Guowei Wei

Topological data analysis is a relatively new branch of machine learning that excels in studying high dimensional data, and is theoretically known to be robust against noise. Meanwhile, data objects with mixed numeric and categorical…

代数拓扑 · 数学 2020-06-15 Chengyuan Wu , Carol Anne Hargreaves

We use methods from computational algebraic topology to study functional brain networks, in which nodes represent brain regions and weighted edges encode the similarity of fMRI time series from each region. With these tools, which allow one…

定量方法 · 定量生物学 2020-08-27 Bernadette J. Stolz , Tegan Emerson , Satu Nahkuri , Mason A. Porter , Heather A. Harrington

Bipartite graph embedding (BGE) maps nodes to compressed embedding vectors that can reflect the hidden topological features of the network, and learning high-quality BGE is crucial for facilitating downstream applications such as…

社会与信息网络 · 计算机科学 2024-10-15 Shanfan Zhang , Yongyi Lin , Yuan Rao , Zhan Bu

With the increasing prevalence of graph-structured data, multi-view graph clustering has been widely used in various downstream applications. Existing approaches primarily rely on a unified message passing mechanism, which significantly…

人工智能 · 计算机科学 2024-10-07 Jianpeng Chen , Yawen Ling , Yazhou Ren , Zichen Wen , Tianyi Wu , Shufei Zhang , Lifang He

Technological advances facilitate the ability to acquire multimodal data, posing a challenge for recognition systems while also providing an opportunity to use the heterogeneous nature of the information to increase the generalization…

机器学习 · 计算机科学 2024-08-06 Paweł Zyblewski , Leandro L. Minku

Topology and machine learning are two actively researched topics not only in condensed matter physics, but also in data science. Here, we propose the use of topological data analysis in unsupervised learning of the topological phase…

介观与纳米尺度物理 · 物理学 2022-05-12 Sungjoon Park , Yoonseok Hwang , Bohm-Jung Yang

In the era of big data, data mining has become indispensable for uncovering hidden patterns and insights from vast and complex datasets. The integration of multimodal data sources further enhances its potential. Multimodal Federated…

机器学习 · 计算机科学 2025-08-22 Lishan Yang , Wei Emma Zhang , Quan Z. Sheng , Lina Yao , Weitong Chen , Ali Shakeri

We discuss topological aspects of cluster analysis and show that inferring the topological structure of a dataset before clustering it can considerably enhance cluster detection: theoretical arguments and empirical evidence show that…

机器学习 · 计算机科学 2022-07-04 Moritz Herrmann , Daniyal Kazempour , Fabian Scheipl , Peer Kröger

We propose a topological learning algorithm for the estimation of the conditional dependency structure of large sets of random variables from sparse and noisy data. The algorithm, named Maximally Filtered Clique Forest (MFCF), produces a…

机器学习 · 统计学 2021-05-18 Guido Previde Massara , Tomaso Aste

It is important to identify the discriminative features for high dimensional clustering. However, due to the lack of cluster labels, the regularization methods developed for supervised feature selection can not be directly applied. To learn…

机器学习 · 统计学 2025-07-16 Zhaoyu Xing , Yang Wan , Juan Wen , Wei Zhong

Proteins are the most important biomolecules for living organisms. The understanding of protein structure, function, dynamics and transport is one of most challenging tasks in biological science. In the present work, persistent homology is,…

生物大分子 · 定量生物学 2014-12-10 Kelin Xia , Guo-Wei Wei

The clustering of unlabeled raw images is a daunting task, which has recently been approached with some success by deep learning methods. Here we propose an unsupervised clustering framework, which learns a deep neural network in an…

计算机视觉与模式识别 · 计算机科学 2020-12-16 Guy Shiran , Daphna Weinshall

Co-clustering targets on grouping the samples (e.g., documents, users) and the features (e.g., words, ratings) simultaneously. It employs the dual relation and the bilateral information between the samples and features. In many realworld…

机器学习 · 计算机科学 2016-11-18 Ping Li , Jiajun Bu , Chun Chen , Zhanying He , Deng Cai

Hierarchical classification is significant for complex tasks by providing multi-granular predictions and encouraging better mistakes. As the label structure decides its performance, many existing approaches attempt to construct an excellent…

计算机视觉与模式识别 · 计算机科学 2021-07-05 Xiaoni Li , Yucan Zhou , Yu Zhou , Weiping Wang

Subsequence clustering of multivariate time series is a useful tool for discovering repeated patterns in temporal data. Once these patterns have been discovered, seemingly complicated datasets can be interpreted as a temporal sequence of…

机器学习 · 计算机科学 2018-05-16 David Hallac , Sagar Vare , Stephen Boyd , Jure Leskovec

We investigate the adaptation and performance of modularity-based algorithms, designed in the scope of complex networks, to analyze the mesoscopic structure of correlation matrices. Using a multi-resolution analysis we are able to describe…

数据分析、统计与概率 · 物理学 2011-03-31 Clara Granell , Sergio Gomez , Alex Arenas

Many keypoint detection and description methods have been proposed for image matching or registration. While these methods demonstrate promising performance for single-modality image matching, they often struggle with multimodal data…

计算机视觉与模式识别 · 计算机科学 2025-06-25 Yepeng Liu , Zhichao Sun , Baosheng Yu , Yitian Zhao , Bo Du , Yongchao Xu , Jun Cheng

Matrix factorization (MF) is a simple collaborative filtering technique that achieves superior recommendation accuracy by decomposing the user-item interaction matrix into user and item latent matrices. Because the model typically learns…

信息检索 · 计算机科学 2024-03-11 Kai Sugahara , Kazushi Okamoto

In this paper, we introduce multiscale persistent functions for biomolecular structure characterization. The essential idea is to combine our multiscale rigidity functions with persistent homology analysis, so as to construct a series of…

生物大分子 · 定量生物学 2016-12-28 Kelin Xia , Zhiming Li , Lin Mu