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The inverse design of RNA three-dimensional (3D) structures is crucial for engineering functional RNAs in synthetic biology and therapeutics. While recent deep learning approaches have advanced this field, they are typically optimized and…

机器学习 · 计算机科学 2026-05-11 Tianmeng Hu , Yongzheng Cui , Biao Luo , Ke Li

Text-guided domain adaptation and generation of 3D-aware portraits find many applications in various fields. However, due to the lack of training data and the challenges in handling the high variety of geometry and appearance, the existing…

计算机视觉与模式识别 · 计算机科学 2024-04-15 Biwen Lei , Kai Yu , Mengyang Feng , Miaomiao Cui , Xuansong Xie

Retrieval-augmented generation (RAG) has emerged as a pivotal method for expanding the knowledge of large language models. To handle complex queries more effectively, researchers developed Adaptive-RAG (A-RAG) to enhance the generated…

人工智能 · 计算机科学 2025-05-27 Jie Ou , Jinyu Guo , Shuaihong Jiang , Zhaokun Wang , Libo Qin , Shunyu Yao , Wenhong Tian

Retrieval-Augmented Generation (RAG) improves factual grounding by incorporating external knowledge into language model generation. However, when retrieved context is noisy, unreliable, or inconsistent with the model's parametric knowledge,…

计算与语言 · 计算机科学 2026-04-06 Jaemin Kim , Jong Chul Ye

Despite the prevalence and many successes of deep learning applications in de novo molecular design, the problem of peptide generation targeting specific proteins remains unsolved. A main barrier for this is the scarcity of the high-quality…

计算工程、金融与科学 · 计算机科学 2023-02-06 Tong Lin , Sijie Chen , Ruchira Basu , Dehu Pei , Xiaolin Cheng , Levent Burak Kara

Kinship face synthesis is a challenging problem due to the scarcity and low quality of the available kinship data. Existing methods often struggle to generate descendants with both high diversity and fidelity while precisely controlling…

计算机视觉与模式识别 · 计算机科学 2024-12-17 Pin-Yen Chiu , Dai-Jie Wu , Po-Hsun Chu , Chia-Hsuan Hsu , Hsiang-Chen Chiu , Chih-Yu Wang , Jun-Cheng Chen

AI-assisted protein design has emerged as a critical tool for advancing biotechnology, as deep generative models have demonstrated their reliability in this domain. However, most existing models primarily utilize protein sequence or…

计算工程、金融与科学 · 计算机科学 2026-05-27 Changjian Zhou , Yuexi Qiu , Jia Song

Generative AI has the potential to revolutionize drug discovery. Yet, despite recent advances in deep learning, existing models cannot generate molecules that satisfy all desired physicochemical properties. Herein, we describe IDOLpro, a…

化学物理 · 物理学 2025-04-29 Amit Kadan , Kevin Ryczko , Erika Lloyd , Adrian Roitberg , Takeshi Yamazaki

Designing free-form photonic devices is fundamentally challenging due to the vast number of possible geometries and the complex requirements of fabrication constraints. Traditional inverse-design approaches--whether driven by human…

光学 · 物理学 2025-04-25 Dongjin Seo , Soobin Um , Sangbin Lee , Jong Chul Ye , Haejun Chung

Retrieval-Augmented Generation (RAG) is widely used to ground large language models in external knowledge sources. However, when applied to heterogeneous corpora and multi-step queries, Naive RAG pipelines often degrade in quality due to…

信息检索 · 计算机科学 2026-04-10 Valeriy Kovalskiy , Nikita Belov , Nikita Miteyko , Igor Reshetnikov , Max Maximov

Predicting drug-target interaction (DTI) is critical in the drug discovery process. Despite remarkable advances in recent DTI models through the integration of representations from diverse drug and target encoders, such models often…

定量方法 · 定量生物学 2025-09-30 Zhaohan Meng , Zaiqiao Meng , Ke Yuan , Iadh Ounis

Generative recommendation represents each item as a semantic ID, i.e., a sequence of discrete tokens, and generates the next item through autoregressive decoding. While effective, existing autoregressive models face two intrinsic…

信息检索 · 计算机科学 2025-11-12 Teng Shi , Chenglei Shen , Weijie Yu , Shen Nie , Chongxuan Li , Xiao Zhang , Ming He , Yan Han , Jun Xu

Structure-based drug design (SBDD), which aims to generate molecules that can bind tightly to the target protein, is an essential problem in drug discovery, and previous approaches have achieved initial success. However, most existing…

机器学习 · 计算机科学 2024-04-04 Xinze Li , Penglei Wang , Tianfan Fu , Wenhao Gao , Chengtao Li , Leilei Shi , Junhong Liu

Given the audio-visual clip of the speaker, facial reaction generation aims to predict the listener's facial reactions. The challenge lies in capturing the relevance between video and audio while balancing appropriateness, realism, and…

计算机视觉与模式识别 · 计算机科学 2025-06-05 Jiaming Li , Sheng Wang , Xin Wang , Yitao Zhu , Honglin Xiong , Zixu Zhuang , Qian Wang

Structure-based drug design (SBDD) aims to design small-molecule ligands that bind with high affinity and specificity to pre-determined protein targets. Generative SBDD methods leverage structural data of drugs in complex with their protein…

Standard clothing asset generation involves restoring forward-facing flat-lay garment images displayed on a clear background by extracting clothing information from diverse real-world contexts, which presents significant challenges due to…

计算机视觉与模式识别 · 计算机科学 2025-10-13 Xianfeng Tan , Yuhan Li , Wenxiang Shang , Yubo Wu , Jian Wang , Xuanhong Chen , Yi Zhang , Ran Lin , Bingbing Ni

Accurate prediction of protein-ligand binding structures, a task known as molecular docking is crucial for drug design but remains challenging. While deep learning has shown promise, existing methods often depend on holo-protein structures…

生物大分子 · 定量生物学 2024-02-22 Yufei Huang , Odin Zhang , Lirong Wu , Cheng Tan , Haitao Lin , Zhangyang Gao , Siyuan Li , Stan. Z. Li

Recent advances in large language models (LLMs) have shown great potential to accelerate drug discovery. However, the specialized nature of biochemical data often necessitates costly domain-specific fine-tuning, posing major challenges.…

Diffusion models enable high-quality and diverse visual content synthesis. However, they struggle to generate rare or unseen concepts. To address this challenge, we explore the usage of Retrieval-Augmented Generation (RAG) with image…

计算机视觉与模式识别 · 计算机科学 2026-02-10 Rotem Shalev-Arkushin , Rinon Gal , Amit H. Bermano , Ohad Fried

The exponential growth of scientific knowledge has created significant barriers to cross-disciplinary knowledge discovery, synthesis and research collaboration. In response to this challenge, we present BioSage, a novel compound AI…