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The paradigm of retrieval-augmented generated (RAG) helps mitigate hallucinations of large language models (LLMs). However, RAG also introduces biases contained within the retrieved documents. These biases can be amplified in scenarios…

Discrete diffusion models have emerged as a powerful class of models and a promising route to fast language generation, but practical implementations typically rely on factored reverse transitions ignoring cross-token dependencies and…

机器学习 · 计算机科学 2026-05-14 Dario Shariatian , Alain Durmus , Umut Simsekli , Stefano Peluchetti

Manually generating access control policies from an organization's high-level requirement specifications poses significant challenges. It requires laborious efforts to sift through multiple documents containing such specifications and…

密码学与安全 · 计算机科学 2024-09-16 Sakuna Harinda Jayasundara , Nalin Asanka Gamagedara Arachchilage , Giovanni Russello

Future wireless networks aim to deliver high data rates and lower power consumption while ensuring seamless connectivity, necessitating robust optimization. Large language models (LLMs) have been deployed for generalized optimization…

网络与互联网体系结构 · 计算机科学 2025-03-12 Muhammad Ahmed Mohsin , Ahsan Bilal , Sagnik Bhattacharya , John M. Cioffi

We devise an approach for targeted molecular design, a problem of interest in computational drug discovery: given a target protein site, we wish to generate a chemical with both high binding affinity to the target and satisfactory…

人工智能 · 计算机科学 2018-09-07 Tristan Aumentado-Armstrong

Retrieval-Augmented Generation (RAG) improves reliability of large language models by incorporating external knowledge, but the retrieval process can introduce bias that propagates to generated outputs. This issue is particularly…

数据库 · 计算机科学 2026-05-18 Yingqi Zhao , Vasilis Efthymiou , Jyrki Nummenmaa , Kostas Stefanidis

Recent diffusion model advancements have enabled high-fidelity images to be generated using text prompts. However, a domain gap exists between generated images and real-world images, which poses a challenge in generating high-quality…

计算机视觉与模式识别 · 计算机科学 2023-11-08 Yuechen Zhang , Jinbo Xing , Eric Lo , Jiaya Jia

We present TerraBind, a foundation model for protein-ligand structure and binding affinity prediction that achieves 26-fold faster inference than state-of-the-art methods while improving affinity prediction accuracy by $\sim$20\%. Current…

Recent advances in generative modeling, namely Diffusion models, have revolutionized generative modeling, enabling high-quality image generation tailored to user needs. This paper proposes a framework for the generative design of structural…

Retrieval-augmented generation (RAG) has become a dominant paradigm for grounding large language models (LLMs) with external evidence in knowledge-intensive question answering. A core design choice is how to fuse retrieved samples into the…

计算与语言 · 计算机科学 2026-02-16 Yixin Chen , Ying Xiong , Shangyu Wu , Xiangrui Ke , Nan Guan , Chun Jason Xue

Without knowledge of specific pockets, generating ligands based on the global structure of a protein target plays a crucial role in drug discovery as it helps reduce the search space for potential drug-like candidates in the pipeline.…

生物大分子 · 定量生物学 2023-10-02 Nhat Khang Ngo , Truong Son Hy

Histological artifacts pose challenges for both pathologists and Computer-Aided Diagnosis (CAD) systems, leading to errors in analysis. Current approaches for histological artifact restoration, based on Generative Adversarial Networks…

图像与视频处理 · 电气工程与系统科学 2024-07-30 Zhenqi He , Wenrui Liu , Minghao Yin , Kai Han

Deep generative models have achieved tremendous success in structure-based drug design in recent years, especially for generating 3D ligand molecules that bind to specific protein pocket. Notably, diffusion models have transformed ligand…

机器学习 · 计算机科学 2024-12-03 Daiheng Zhang , Chengyue Gong , Qiang Liu

Diffusion models demonstrate remarkable capabilities in capturing complex data distributions and have achieved compelling results in many generative tasks. While they have recently been extended to dense prediction tasks such as depth…

计算机视觉与模式识别 · 计算机科学 2025-12-16 Haorui Ji , Taojun Lin , Hongdong Li

This study investigates human-computer interface generation based on diffusion models to overcome the limitations of traditional template-based design and fixed rule-driven methods. It first analyzes the key challenges of interface…

人机交互 · 计算机科学 2026-01-13 Rui Liu , Liuqingqing Yang , Runsheng Zhang , Shixiao Wang

Diffusion-based models demonstrate impressive generation capabilities. However, they also have a massive number of parameters, resulting in enormous model sizes, thus making them unsuitable for deployment on resource-constraint devices.…

计算机视觉与模式识别 · 计算机科学 2024-09-04 Avideep Mukherjee , Soumya Banerjee , Piyush Rai , Vinay P. Namboodiri

Accurate identification of drug-target interactions (DTI) remains a central challenge in computational pharmacology, where sequence-based methods offer scalability. This work introduces a sequence-based drug-target interaction framework…

Deep learning is widely applied in computer-aided pathological diagnosis, which alleviates the pathologist workload and provide timely clinical analysis. However, most models generally require large-scale annotated data for training, which…

计算机视觉与模式识别 · 计算机科学 2024-03-12 Zeyu Liu , Tianyi Zhang , Yufang He , Yunlu Feng , Yu Zhao , Guanglei Zhang

Designing RNA molecules that interact with specific proteins is a critical challenge in experimental and computational biology. Existing computational approaches require a substantial amount of previously known interacting RNA sequences for…

机器学习 · 计算机科学 2026-04-17 Roman Klypa , Alberto Bietti , Sergei Grudinin

Diffusion models offer a powerful means of capturing the manifold of realistic protein structures, enabling rapid design for protein engineering tasks. However, existing approaches observe critical failure modes when precise constraints are…

生物大分子 · 定量生物学 2026-03-27 Jacob K. Christopher , Austin Seamann , Jingyi Cui , Sagar Khare , Ferdinando Fioretto