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We consider a cellular monolayer, described using a vertex-based model, for which cells form a spatially disordered array of convex polygons that tile the plane. Equilibrium cell configurations are assumed to minimize a global energy…

细胞行为 · 定量生物学 2018-05-30 Alexander Nestor-Bergmann , Emma Johns , Sarah Woolner , Oliver E. Jensen

We investigate the viscoelastic relaxation to equilibrium of a disordered planar epithelium described using the cell vertex model. In its standard form, the model is formulated as coupled evolution equations for the locations of vertices of…

生物物理 · 物理学 2025-10-27 Natasha Cowley , Christopher K. Revell , Emma Johns , Sarah Woolner , Oliver E. Jensen

Using a popular vertex-based model to describe a spatially disordered planar epithelial monolayer, we examine the relationship between cell shape and mechanical stress at the cell and tissue level. Deriving expressions for stress tensors…

细胞行为 · 定量生物学 2017-08-14 Alexander Nestor-Bergmann , Georgina Goddard , Sarah Woolner , Oliver Jensen

Coordinated motion of cell monolayers during epithelial wound healing and tissue morphogenesis involves mechanical stress generation. Here we propose a model for the dynamics of epithelial expansion that couples mechanical deformations in…

软凝聚态物质 · 物理学 2015-06-09 Shiladitya Banerjee , Kazage J. C. Utuje , M. Cristina Marchetti

The vertex model is widely used to simulate the mechanical properties of confluent epithelia and other multicellular tissues. This inherently discrete framework allows a Cauchy stress to be attributed to each cell, and its symmetric…

组织与器官 · 定量生物学 2022-10-10 Oliver E. Jensen , Christopher K. Revell

Confluent cell monolayers and epithelia tissues show remarkable patterns and correlations in structural arrangements and actively-driven collective flows. We simulate these properties using multiphase field models. The models are based on…

软凝聚态物质 · 物理学 2021-12-08 Dennis Wenzel , Axel Voigt

The folding of cellular monolayers pervades embryonic development and disease. It results from stresses out of the plane of the tissue, often caused by cell shape changes including cell wedging via apical constriction. These local cellular…

软凝聚态物质 · 物理学 2025-12-12 Pierre A. Haas , Stephanie S. M. H. Höhn

Cell layers eliminate unwanted cells through the extrusion process, which underlines healthy versus flawed tissue behaviors. Although several biochemical pathways have been identified, the underlying mechanical basis including the forces…

软凝聚态物质 · 物理学 2023-04-20 Siavash Monfared , Guruswami Ravichandran , Jose E. Andrade , Amin Doostmohammadi

We present a hybrid vertex/cell-centred model for mechanically simulating planar cellular monolayers undergoing cell reorganisation. Cell centres are represented by a triangular nodal network, while the cell boundaries are formed by an…

细胞行为 · 定量生物学 2017-05-17 Payman Mosaffa , Antonio Rodríguez-Ferran , José J. Muñoz

We use a three-dimensional formulation of the cell vertex model to describe the mechanical properties of a confluent planar monolayer of prismatic cells. Treating cell height as a degree of freedom, we reduce the model to a two-dimensional…

生物物理 · 物理学 2025-08-29 Natasha Cowley , Sarah Woolner , Oliver E. Jensen

Cross-sections of cell shapes in a tissue monolayer typically resemble a tiling of convex polygons. Yet, examples exist where the polygons are not convex with curved cell-cell interfaces, as seen in the adaxial epidermis. To date,…

生物物理 · 物理学 2024-06-21 Kyungeun Kim , J. M. Schwarz , Martine Ben Amar

In developing organisms, internal cellular processes generate mechanical stresses at the tissue scale. The resulting deformations depend on the material properties of the tissue, which can exhibit long-ranged orientational order and…

软凝聚态物质 · 物理学 2021-01-20 Carles Blanch-Mercader , Pau Guillamat , Aurélien Roux , Karsten Kruse

We consider the response of a multicomponent body to $n$ fields, such as electric fields, magnetic fields, temperature gradients, concentration gradients, etc., where each component, which is possibly anisotropic, may cross couple the…

材料科学 · 物理学 2016-02-23 Mordehai Milgrom , Graeme W. Milton

Multiphase field models have emerged as an important computational tool for understanding biological tissue while resolving single-cell properties. While they have successfully reproduced many experimentally observed behaviors of living…

软凝聚态物质 · 物理学 2025-02-13 Michael Chiang , Austin Hopkins , Benjamin Loewe , Davide Marenduzzo , M. Cristina Marchetti

We consider the N-body problem in a layered geometry containing cold polar molecules with dipole moments that are polarized perpendicular to the layers. A harmonic approximation is used to simplify the hamiltonian and bound state properties…

量子气体 · 物理学 2012-04-02 J. R. Armstrong , N. T. Zinner , D. V. Fedorov , A. S. Jensen

We use a computational phase-field model together with analytical analysis to study how inter-cellular active forces can mediate individual cell morphology and collective motion in a confluent cell monolayer. Contractile inter-cellular…

软凝聚态物质 · 物理学 2021-11-30 Guanming Zhang , Julia M. Yeomans

In cell extrusion, a cell embedded in an epithelial monolayer loses its apical or basal surface and is subsequently squeezed out of the monolayer by neighboring cells. Cell extrusions occur during apoptosis, epithelial-mesenchymal…

细胞行为 · 定量生物学 2020-04-24 Satoru Okuda , Koichi Fujimoto

The vertex model is a popular framework for modelling tightly packed biological cells, such as confluent epithelia. Cells are described by convex polygons tiling the plane and their equilibrium is found by minimizing a global mechanical…

生物物理 · 物理学 2021-03-17 Oliver E. Jensen , Emma Johns , Sarah Woolner

Spatiotemporal patterns in multicellular systems are important to understanding tissue dynamics, for instance, during embryonic development and disease. Here, we use a multiphase field model to study numerically the behavior of a…

软凝聚态物质 · 物理学 2025-02-13 Michael Chiang , Austin Hopkins , Benjamin Loewe , M. Cristina Marchetti , Davide Marenduzzo

Epithelial monolayers are some of the best-studied models for collective cell migration due to their abundance in multicellular systems and their tractability. Experimentally, the collective migration of epithelial monolayers can be…

定量方法 · 定量生物学 2024-02-15 Simon F. Martina-Perez , Isaac B. Breinyn , Daniel J. Cohen , Ruth E. Baker
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