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相关论文: Behavioural Classification in C. elegans: a Spatio…

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The ability to acquire large-scale recordings of neuronal activity in awake and unrestrained animals poses a major challenge for studying neural coding of animal behavior. We present a new instrument capable of recording intracellular…

We illustrate shape mode analysis as a simple, yet powerful technique to concisely describe complex biological shapes and their dynamics. We characterize undulatory bending waves of beating flagella and reconstruct a limit cycle of…

定量方法 · 定量生物学 2015-06-22 Steffen Werner , Jochen C. Rink , Ingmar H. Riedel-Kruse , Benjamin M. Friedrich

C. elegans is the only animal for which a detailed neural connectivity diagram has been constructed. However, synaptic polarities in this diagram, and thus, circuit functions are largely unknown. Here, we deciphered the likely polarities of…

神经元与认知 · 定量生物学 2014-03-21 Franciszek Rakowski , Jagan Srinivasan , Paul W. Sternberg , Jan Karbowski

Dissipative environments are ubiquitous in nature, from microscopic swimmers in low-Reynolds-number fluids to macroscopic animals in frictional media. In this study, motivated by various behaviours of {\it Caenorhabditis elegans} during…

适应与自组织系统 · 物理学 2025-04-15 Kenta Ishimoto , Clément Moreau , Johann Herault

We present what we believe to be the first formal verification of a biologically realistic (nonlinear ODE) model of a neural circuit in a multicellular organism: Tap Withdrawal (TW) in \emph{C. Elegans}, the common roundworm. TW is a…

计算机科学中的逻辑 · 计算机科学 2015-03-24 Md. Ariful Islam , Richard DeFrancisco , Chuchu Fan , Radu Grosu , Sayan Mitra , Scott A. Smolka

Advances in optical neuroimaging techniques now allow neural activity to be recorded with cellular resolution in awake and behaving animals. Brain motion in these recordings pose a unique challenge. The location of individual neurons must…

神经元与认知 · 定量生物学 2017-05-22 Jeffrey P. Nguyen , Ashley N. Linder , George S. Plummer , Joshua W. Shaevitz , Andrew M. Leifer

Quantitative models of associative learning that explain the behavior of real animals with high precision have turned out very difficult to construct. We do this in the context of the dynamics of the thermal preference of C. elegans. For…

生物物理 · 物理学 2022-06-02 Ahmed Roman , Konstantine Palanski , Ilya Nemenman , William S Ryu

We analyse the neural dynamics and its relation with the emergent behaviour of a robotic vehicle that is controlled by a neural network numerical simulation based on the nervous system of the nematode Caenorhabditis elegans. The robot…

神经元与认知 · 定量生物学 2020-11-19 Carlos E. Valencia Urbina , Sergio A. Cannas , Pablo M. Gleiser

Animal behavior analysis plays a crucial role in understanding animal welfare, health status, and productivity in agricultural settings. However, traditional manual observation methods are time-consuming, subjective, and limited in…

计算机视觉与模式识别 · 计算机科学 2026-05-11 Haiyu Yang , Enhong Liu , Jennifer Sun , Sumit Sharma , Meike van Leerdam , Sebastien Franceschini , Puchun Niu , Miel Hostens

Self-propelling organisms locomote via generation of patterns of self-deformation. Despite the diversity of body plans, internal actuation schemes and environments in limbless vertebrates and invertebrates, such organisms often use similar…

In primate groups, collective movements are typically described as processes dependent on leadership mechanisms. However, in some species, decision-making includes negotiations and distributed leadership. These facts suggest that simple…

种群与进化 · 定量生物学 2007-05-23 H. Meunier , J. -B. Leca , J. -L. Deneubourg , O. Petit

The physical and bio-mechanical principles that govern undulatory movement on wet surfaces have important applications in physiology, physics, and engineering. The nematode {\it C. elegans}, with its highly stereotypical and functionally…

流体动力学 · 物理学 2015-06-03 Xiao N. Shen , J. Sznitman , P. Krajacic , T. Lamitina , P. E. Arratia

To establish the relationship between locomotory behavior and dynamics of neural circuits in the nematode C. elegans we combined molecular and theoretical approaches. In particular, we quantitatively analyzed the motion of C. elegans with…

神经元与认知 · 定量生物学 2008-06-10 Jan Karbowski , Gary Schindelman , Chris J. Cronin , Adeline Seah , Paul W. Sternberg

Free-living nematode Caenorhabditis elegans is a powerful genetic model, essential for investigations ranging from behavior to neuroscience to aging, and locomotion is a key observable used in these studies. However, despite the fact that…

Many animals in their natural habitat exhibit collective motion and form complex patterns to tackle environmental difficulties. Several physical and biological factors, such as animal motility, population densities, and chemical cues, play…

生物物理 · 物理学 2019-06-25 Esin Demir , Y. Ilker Yaman , Askin Kocabas

This study examined whether a single ceiling-mounted camera could be used to capture fine-grained learning behaviours in co-located practical learning. In undergraduate nursing simulations, teachers first identified seven observable…

人机交互 · 计算机科学 2026-03-17 Xinyu Li , Linxuan Zhao , Roberto Martinez-Maldonado , Dragan Gasevic , Lixiang Yan

In order to keep their cohesiveness during locomotion gregarious animals must make collective decisions. Many species boast complex societies with multiple levels of communities. A common case is when two dominant levels exist, one…

生物物理 · 物理学 2017-04-03 Bence Ferdinandy , Katalin Ozogány , Tamás Vicsek

Systems comprised of self-steering active Brownian particles are studied via simulations for a minimal cognitive flocking model. The dynamics of the active Brownian particles is extended by an orientational response with limited…

软凝聚态物质 · 物理学 2024-06-04 Rajendra Singh Negi , Roland G. Winkler , Gerhard Gompper

Understanding the dynamical behavior of complex systems from their underlying network architectures is a long-standing question in complexity theory. Therefore, many metrics have been devised to extract network features like motifs,…

神经元与认知 · 定量生物学 2024-09-05 Bryant Avila , Pedro Augusto , David Phillips , Tommaso Gili , Manuel Zimmer , Hernán A. Makse

Machine learning and computer vision methods have a major impact on the study of natural animal behavior, as they enable the (semi-)automatic analysis of vast amounts of video data. Mice are the standard mammalian model system in most…