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Existing works show that augmenting the training data of pre-trained language models (PLMs) for classification tasks fine-tuned via parameter-efficient fine-tuning methods (PEFT) using both clean and adversarial examples can enhance their…

计算与语言 · 计算机科学 2024-06-18 Tuc Nguyen , Thai Le

In this work, we revisit the marking decisions made in the standard adaptive finite element method (AFEM). Experience shows that a na\"{i}ve marking policy leads to inefficient use of computational resources for adaptive mesh refinement…

数值分析 · 数学 2023-12-27 Andrew Gillette , Brendan Keith , Socratis Petrides

The primary objective of most lead optimization campaigns is to enhance the binding affinity of ligands. For large molecules such as antibodies, identifying mutations that enhance antibody affinity is particularly challenging due to the…

机器学习 · 计算机科学 2024-06-12 Alexandra Gessner , Sebastian W. Ober , Owen Vickery , Dino Oglić , Talip Uçar

In this research, medical information from 1200 patients across various hospitals in Iraq was collected over a period of 3 years, from February 3, 2018, to March 5, 2021. The study encompassed several infections, including urinary tract…

其他定量生物学 · 定量生物学 2023-07-28 Maitham G. Yousif

Antibiotic resistance constitutes a major health threat. Predicting bacterial causes of infections is key to reducing antibiotic misuse, a leading driver of antibiotic resistance. We train a machine learning algorithm on administrative and…

综合经济学 · 经济学 2019-06-10 Michael Allan Ribers , Hannes Ullrich

In recent decades, antibodies have emerged as indispensable therapeutics for combating diseases, particularly viral infections. However, their development has been hindered by limited structural information and labor-intensive engineering…

生物大分子 · 定量生物学 2023-09-01 Hongtai Jing , Zhengtao Gao , Sheng Xu , Tao Shen , Zhangzhi Peng , Shwai He , Tao You , Shuang Ye , Wei Lin , Siqi Sun

As the development of new classes of antibiotics slows, bacterial resistance to existing antibiotics is becoming an increasing problem. A potential solution is to develop treatment strategies with an alternative mode of action. We consider…

细胞行为 · 定量生物学 2018-07-04 Paul A. Roberts , Ryan M. Huebinger , Emma Keen , Anne-Marie Krachler , Sara Jabbari

With the increasing penetration of distributed energy resources, distributed optimization algorithms have attracted significant attention for power systems applications due to their potential for superior scalability, privacy, and…

系统与控制 · 电气工程与系统科学 2022-05-09 Sihan Zeng , Alyssa Kody , Youngdae Kim , Kibaek Kim , Daniel K. Molzahn

To reduce doctors' workload, deep-learning-based automatic medical report generation has recently attracted more and more research efforts, where attention mechanisms and reinforcement learning are integrated with the classic…

计算与语言 · 计算机科学 2020-11-17 Wenting Xu , Chang Qi , Zhenghua Xu , Thomas Lukasiewicz

Antimicrobial stewardship (AMS) is critical in pediatric intensive care units (PICUs), where diagnostic uncertainty often drives broad-spectrum antibiotic use, increasing antimicrobial resistance and potential long-term harms. Machine…

机器学习 · 计算机科学 2026-05-22 Niklas Raehse , Luregn J. Schlapbach , Daphné Chopard

Reasoning about failures is crucial for building reliable and trustworthy robotic systems. Prior approaches either treat failure reasoning as a closed-set classification problem or assume access to ample human annotations. Failures in the…

Antibiotic resistance, which is a serious healthcare issue, emerges due to uncontrolled and repeated antibiotic use that causes bacteria to mutate and develop resistance to antibiotics. The Antibiotics Time Machine Problem aims to come up…

最优化与控制 · 数学 2025-01-22 Deniz Tuncer , Burak Kocuk

Rapid identification of bacteria is essential to prevent the spread of infectious disease, help combat antimicrobial resistance, and improve patient outcomes. Raman optical spectroscopy promises to combine bacterial detection,…

AlphaFold can be used for both single-chain and multi-chain protein structure prediction, while the latter becomes extremely challenging as the number of chains increases. In this work, by taking each chain as a node and assembly actions as…

计算工程、金融与科学 · 计算机科学 2024-05-08 Ziqi Gao , Tao Feng , Jiaxuan You , Chenyi Zi , Yan Zhou , Chen Zhang , Jia Li

Adaptive Mesh Refinement (AMR) enhances the Finite Element Method, an important technique for simulating complex problems in engineering, by dynamically refining mesh regions, enabling a favorable trade-off between computational speed and…

多智能体系统 · 计算机科学 2023-10-11 Niklas Freymuth , Philipp Dahlinger , Tobias Würth , Simon Reisch , Luise Kärger , Gerhard Neumann

As supercomputers advance towards exascale capabilities, computational intensity increases significantly, and the volume of data requiring storage and transmission experiences exponential growth. Adaptive Mesh Refinement (AMR) has emerged…

分布式、并行与集群计算 · 计算机科学 2023-07-20 Daoce Wang , Jesus Pulido , Pascal Grosset , Jiannan Tian , Sian Jin , Houjun Tang , Jean Sexton , Sheng Di , Zarija Lukić , Kai Zhao , Bo Fang , Franck Cappello , James Ahrens , Dingwen Tao

Antimicrobial resistance is a silent pandemic that is being exacerbated by the uncontrolled use of antibiotics. Since the discovery of penicillin, we have been largely dependent on microbe-derived small molecules to treat bacterial…

种群与进化 · 定量生物学 2022-10-26 Hyunjin Shim

With the prevalence of multimedia content on the Web, developing recommender solutions that can effectively leverage the rich signal in multimedia data is in urgent need. Owing to the success of deep neural networks in representation…

信息检索 · 计算机科学 2019-05-30 Jinhui Tang , Xiaoyu Du , Xiangnan He , Fajie Yuan , Qi Tian , Tat-Seng Chua

New antibiotics are needed to battle growing antibiotic resistance, but the development process from hit, to lead, and ultimately to a useful drug, takes decades. Although progress in molecular property prediction using machine-learning…

Despite the remarkable advances that have been made in continual learning, the adversarial vulnerability of such methods has not been fully discussed. We delve into the adversarial robustness of memory-based continual learning algorithms…

计算机视觉与模式识别 · 计算机科学 2023-11-30 Xiaoyue Mi , Fan Tang , Zonghan Yang , Danding Wang , Juan Cao , Peng Li , Yang Liu