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Many cellular components are present in such low numbers that individual stochastic production and degradation events lead to significant fluctuations in molecular abundances. Although feedback control can, in principle, suppress such…

分子网络 · 定量生物学 2025-12-25 Ryan Ripsman , Brayden Kell , Andreas Hilfinger

The physical limit with which a cell senses external ligand concentration corresponds to the perfect absorber, where all ligand particles are absorbed and overcounting of same ligand particles does not occur. Here we analyze how the lateral…

亚细胞过程 · 定量生物学 2015-11-06 Gerardo Aquino , Robert G. Endres

The CMOS camera found in many cellphones is sensitive to ionized electrons. Gamma rays penetrate into the phone and produce ionized electrons that are then detected by the camera. Thermal noise and other noise needs to be removed on the…

仪器与探测器 · 物理学 2014-01-07 Joshua J. Cogliati , Kurt W. Derr , Jayson Wharton

Accurate detection of target molecules at low concentrations in the presence of a high concentration of undesired molecules is a major challenge for End Point (EP) assays. Non-specific binding of undesired molecules to receptors limits the…

化学物理 · 物理学 2019-12-03 Deepak Gopalan , Pradeep R. Nair

The random motion of molecules in living cells has consistently been reported to deviate from standard Brownian motion, a behavior coined as ``anomalous diffusion''. Fluorescence Correlation Spectroscopy (FCS) is a powerful method to…

The dual phosphorylation network provides an essential component of intracellular signaling, affecting the expression of phenotypes and cell metabolism. For particular choices of kinetic parameters, this system exhibits multistationarity, a…

最优化与控制 · 数学 2024-09-25 May Cai , Matthias Himmelmann , Birte Ostermann

Previous models of the cerebrovascular smooth muscle cell have not addressed the interaction between the electrical, chemical and mechanical components of cell function during the development of active tension. These models are primarily…

细胞行为 · 定量生物学 2013-03-27 Jin Yang , John W. Clark , Robert M. Bryan , Claudia S. Robertson

Dual phospho/dephosphorylation cycles, as well as covalent enzymatic-catalyzed modifications of substrates, are widely diffused within cellular systems and are crucial for the control of complex responses such as learning, memory and…

生物物理 · 物理学 2015-05-28 A. Bazzani , G. Castellani , E. Giampieri , D. Remondini , L. N Cooper

Molecular recognition, which is essential in processing information in biological systems, takes place in a crowded noisy biochemical environment and requires the recognition of a specific target within a background of various similar…

生物大分子 · 定量生物学 2010-07-27 Yonatan Savir , Tsvi Tlusty

Presented with sensory challenges, living cells employ extensive noisy, fluctuating signalling and communication among themselves to compute a physiologically proper response which often results in symmetry breaking. We propose, based on…

生物物理 · 物理学 2022-06-17 Dean Korošak , Andraž Stožer , Marjan Slak Rupnik

Chemical reactions in cell are subject to intense stochastic fluctuations. An important question is how the fundamental physiological behavior of cell is kept stable against those noisy perturbations. In this paper a stochastic model of…

分子网络 · 定量生物学 2009-11-13 Yurie Okabe , Masaki Sasai

A resonant photoacoustic cell capable of detecting the traces of gases at an amplitude-modulation regime is represented. The cell is designed so as to minimize the window background for the cell operation at a selected acoustic resonance. A…

光学 · 物理学 2014-05-29 A. L. Ulasevich , A. V. Gorelik , A. A. Kouzmouk , V. S. Starovoitov

Chemotaxis is a ubiquitous biological phenomenon in which cells detect a spatial gradient of chemoattractant, and then move towards the source. Here we present a position-dependent advection-diffusion model that quantitatively describes the…

生物物理 · 物理学 2018-04-06 Zahra Eidi , Farshid Mohammad-Rafiee , Mohammad Khorrami , Azam Gholami

Metabolic oscillations in single cells underlie the mechanisms behind cell synchronization and cell-cell communication. For example, glycolytic oscillations mediated by biochemical communication between cells may synchronize the pulsatile…

Biological cells encode information about their environment through biochemical signaling networks that control their internal state and response. This information is often encoded in the dynamical patterns of the signaling molecules,…

分子网络 · 定量生物学 2023-04-24 Lauritz Hahn , Aleksandra M. Walczak , Thierry Mora

Biological cells are able to adapt their behaviour in response to environmental cues. Durotaxis is a phenomenon in which cells adjust their migration depending on the mechanical properties of a surrounding substrate. Although durotaxis has…

生物物理 · 物理学 2026-05-11 Sohei Nakamura , Mitsusuke Tarama

Collective migration of eukaryotic cells is often guided by chemotaxis, and is critical in several biological processes, such as cancer metastasis, wound healing, and embryogenesis. Understanding collective chemotaxis has challenged…

生物物理 · 物理学 2024-08-12 Aditya Paspunurwar , Adrian Moure , Hector Gomez

We present a simple model that describes the motion of a single chemotactic cell exposed to a traveling wave of the chemoattractant. The model incorporates two types of responses to stimulation by the chemoattractant, i.e., change in…

生物物理 · 物理学 2011-10-26 Masatomo Iwasa , Ryosuke Ishiwata

Unicellular organisms exhibit elaborate collective behaviors in response to environmental cues. These behaviors are controlled by complex biochemical networks within individual cells and coordinated through cell-to-cell communication.…

细胞行为 · 定量生物学 2015-06-24 Javad Noorbakhsh , David Schwab , Allyson Sgro , Thomas Gregor , Pankaj Mehta

Several meters below the coastal ocean surface there are areas of high ecological activity that contain thin layers of concentrated motile phytoplankton. Gyrotactic trapping has been proposed as a potential mechanism for layer formation of…

流体动力学 · 物理学 2019-05-22 Smitha Maretvadakethope , Eric E. Keaveny , Yongyun Hwang