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Magnetic Resonance Imaging (MRI) is pivotal in radiology, offering non-invasive and high-quality insights into the human body. Precise segmentation of MRIs into different organs and tissues would be highly beneficial since it would allow…

This work introduces DyABD, a novel and complex benchmark dataset of dynamic abdominal MRIs from patients with abdominal hernias and associated high quality abdominal muscle annotations. DyABD is the first-of-its-kind in four key ways; (1)…

计算机视觉与模式识别 · 计算机科学 2026-04-28 Niamh Belton , Victoria Joppin , Aonghus Lawlor , Catherine Masson , Thierry Bege , David Bendahan , Kathleen M. Curran

Magnetic resonance imaging (MRI) enables non-invasive, high-resolution analysis of muscle structures. However, automated segmentation remains limited by high computational costs, reliance on large training datasets, and reduced accuracy in…

计算机视觉与模式识别 · 计算机科学 2025-07-14 Mengyuan Liu , Jeongkyu Lee

We propose a method for automatic segmentation of individual muscles from a clinical CT. The method uses Bayesian convolutional neural networks with the U-Net architecture, using Monte Carlo dropout that infers an uncertainty metric in…

图像与视频处理 · 电气工程与系统科学 2019-12-10 Yuta Hiasa , Yoshito Otake , Masaki Takao , Takeshi Ogawa , Nobuhiko Sugano , Yoshinobu Sato

Since the introduction of TotalSegmentator CT, there is demand for a similar robust automated MRI segmentation tool that can be applied across all MRI sequences and anatomic structures. In this retrospective study, a nnU-Net model…

Purpose: To develop and evaluate a deep learning model for multi-organ segmentation of MRI scans. Materials and Methods: The model was trained on 1,200 manually annotated 3D axial MRI scans from the UK Biobank, 221 in-house MRI scans, and…

Muscle volume is a useful quantitative biomarker in sports, but also for the follow-up of degenerative musculo-skelletal diseases. In addition to volume, other shape biomarkers can be extracted by segmenting the muscles of interest from…

计算机视觉与模式识别 · 计算机科学 2023-11-01 Louise Piecuch , Vanessa Gonzales Duque , Aurélie Sarcher , Enzo Hollville , Antoine Nordez , Giuseppe Rabita , Gaël Guilhem , Diana Mateus

Magnetic resonance imaging (MRI) of thigh and calf muscles is one of the most effective techniques for estimating fat infiltration into muscular dystrophies. The infiltration of adipose tissue into the diseased muscle region varies in its…

图像与视频处理 · 电气工程与系统科学 2019-10-14 Rula Amer , Jannette Nassar , David Bendahan , Hayit Greenspan , Noam Ben-Eliezer

Automatic segmentation of pathological shoulder muscles in patients with musculo-skeletal diseases is a challenging task due to the huge variability in muscle shape, size, location, texture and injury. A reliable fully-automated…

计算机视觉与模式识别 · 计算机科学 2020-04-28 Pierre-Henri Conze , Sylvain Brochard , Valérie Burdin , Frances T. Sheehan , Christelle Pons

We present a deep learning segmentation model that can automatically and robustly segment all major anatomical structures in body CT images. In this retrospective study, 1204 CT examinations (from the years 2012, 2016, and 2020) were used…

Background: Segmentation of organs and structures in abdominal MRI is useful for many clinical applications, such as disease diagnosis and radiotherapy. Current approaches have focused on delineating a limited set of abdominal structures…

图像与视频处理 · 电气工程与系统科学 2025-08-07 Yan Zhuang , Tejas Sudharshan Mathai , Pritam Mukherjee , Brandon Khoury , Boah Kim , Benjamin Hou , Nusrat Rabbee , Abhinav Suri , Ronald M. Summers

Accurate musculoskeletal soft tissue tumor segmentation is vital for assessing tumor size, location, diagnosis, and response to treatment, thereby influencing patient outcomes. However, segmentation of these tumors requires clinical…

图像与视频处理 · 电气工程与系统科学 2024-09-06 Tahsin Reasat , Stephen Chenard , Akhil Rekulapelli , Nicholas Chadwick , Joanna Shechtel , Katherine van Schaik , David S. Smith , Joshua Lawrenz

Magnetic resonance imaging (MRI) is a central modality for stroke imaging. It is used upon patient admission to make treatment decisions such as selecting patients for intravenous thrombolysis or endovascular therapy. MRI is later used in…

This paper presents a large publicly available multi-center lumbar spine magnetic resonance imaging (MRI) dataset with reference segmentations of vertebrae, intervertebral discs (IVDs), and spinal canal. The dataset includes 447 sagittal T1…

Segmentation of skeletal muscles in Magnetic Resonance Images (MRI) is essential for the study of muscle physiology and diagnosis of muscular pathologies. However, manual segmentation of large MRI volumes is a time-consuming task. The…

计算机视觉与模式识别 · 计算机科学 2019-04-10 Rafael Rodrigues , Antonio M. G. Pinheiro

Deep learning underpins a wide range of applications in MRI, including reconstruction, artifact removal, and segmentation. However, progress has been driven largely by public datasets focused on brain and knee imaging, shaping how models…

计算机视觉与模式识别 · 计算机科学 2026-04-14 Paula Arguello , Berk Tinaz , Mohammad Shahab Sepehri , Maryam Soltanolkotabi , Mahdi Soltanolkotabi

Deep learning-based image segmentation has allowed for the fully automated, accurate, and rapid analysis of musculoskeletal (MSK) structures from medical images. However, current approaches were either applied only to 2D cross-sectional…

The widespread use of Magnetic Resonance Imaging (MRI) in combination with deep learning shows promise for many high-impact automated diagnostic and prognostic tools. However, training new models requires large amounts of labeled data, a…

图像与视频处理 · 电气工程与系统科学 2025-07-24 Haoyu Dong , Yuwen Chen , Hanxue Gu , Nicholas Konz , Yaqian Chen , Qihang Li , Maciej A. Mazurowski

Cortical lesions (CLs) have emerged as valuable biomarkers in multiple sclerosis (MS), offering high diagnostic specificity and prognostic relevance. However, their routine clinical integration remains limited due to subtle magnetic…

Purpose: To organize a knee MRI segmentation challenge for characterizing the semantic and clinical efficacy of automatic segmentation methods relevant for monitoring osteoarthritis progression. Methods: A dataset partition consisting of 3D…

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