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Sparse autoencoders (SAEs) offer a natural path toward comparable explanations across different representation spaces. However, current SAEs are trained per modality, producing dictionaries whose features are not directly understandable and…

计算机视觉与模式识别 · 计算机科学 2026-02-10 Difei Gu , Yunhe Gao , Gerasimos Chatzoudis , Zihan Dong , Guoning Zhang , Bangwei Guo , Yang Zhou , Mu Zhou , Dimitris Metaxas

Protein language models have revolutionized structure prediction, but their nonlinear nature obscures how sequence representations inform structure prediction. While sparse autoencoders (SAEs) offer a path to interpretability here by…

生物大分子 · 定量生物学 2025-03-13 Nithin Parsan , David J. Yang , John J. Yang

Dense embeddings deliver strong retrieval performance but often lack interpretability and controllability. This paper introduces a novel approach using sparse autoencoders (SAE) to interpret and control dense embeddings via the learned…

信息检索 · 计算机科学 2025-02-25 Hao Kang , Tevin Wang , Chenyan Xiong

Sparse Autoencoders (SAEs) are an interpretability technique aimed at decomposing neural network activations into interpretable units. However, a major bottleneck for SAE development has been the lack of high-quality performance metrics,…

机器学习 · 计算机科学 2024-12-02 Adam Karvonen , Can Rager , Samuel Marks , Neel Nanda

Developing human understandable interpretation of large language models (LLMs) becomes increasingly critical for their deployment in essential domains. Mechanistic interpretability seeks to mitigate the issues through extracts…

机器学习 · 计算机科学 2026-01-30 Yuhang Liu , Erdun Gao , Dong Gong , Anton van den Hengel , Javen Qinfeng Shi

Sparse autoencoders (SAEs) have been used widely to decompose and interpret neural network activations, especially those of transformer language models. One key issue with SAEs is their inability to directly model multidimensional features.…

机器学习 · 计算机科学 2026-05-12 Collin Francel

The Linear Representation Hypothesis asserts that the embeddings learned by neural networks can be understood as linear combinations of features corresponding to high-level concepts. Based on this ansatz, sparse autoencoders (SAEs) have…

机器学习 · 计算机科学 2026-01-29 Chiraag Kaushik , Davis Barch , Andrea Fanelli

Scientific archives now contain hundreds of petabytes of data across genomics, ecology, climate, and molecular biology that could reveal undiscovered patterns if systematically analyzed at scale. Large-scale, weakly-supervised datasets in…

计算机视觉与模式识别 · 计算机科学 2025-11-25 Samuel Stevens , Jacob Beattie , Tanya Berger-Wolf , Yu Su

Sparse Autoencoders (SAEs) can extract interpretable features from large language models (LLMs) without supervision. However, their effectiveness in downstream steering tasks is limited by the requirement for contrastive datasets or large…

计算与语言 · 计算机科学 2026-05-05 Seonglae Cho , Zekun Wu , Adriano Koshiyama

Sparse Autoencoders (SAEs) are widely used to interpret neural networks by identifying meaningful concepts from their representations. However, do SAEs truly uncover all concepts a model relies on, or are they inherently biased toward…

机器学习 · 计算机科学 2025-12-03 Sai Sumedh R. Hindupur , Ekdeep Singh Lubana , Thomas Fel , Demba Ba

Autoencoders have been used for finding interpretable and disentangled features underlying neural network representations in both image and text domains. While the efficacy and pitfalls of such methods are well-studied in vision, there is a…

机器学习 · 计算机科学 2025-02-06 Abhinav Menon , Manish Shrivastava , David Krueger , Ekdeep Singh Lubana

Sparse Autoencoders (SAEs) have emerged as a powerful unsupervised method for extracting sparse representations from language models, yet scalable training remains a significant challenge. We introduce a suite of 256 SAEs, trained on each…

Large Reasoning Models (LRMs) exhibit human-like cognitive reasoning strategies (e.g. backtracking, cross-verification) during reasoning process, which improves their performance on complex tasks. Currently, reasoning strategies are…

人工智能 · 计算机科学 2026-01-08 Yi Fang , Wenjie Wang , Mingfeng Xue , Boyi Deng , Fengli Xu , Dayiheng Liu , Fuli Feng

This paper studies the problem of Kronecker-structured sparse vector recovery from an underdetermined linear system with a Kronecker-structured dictionary. Such a problem arises in many real-world applications such as the sparse channel…

信号处理 · 电气工程与系统科学 2024-12-03 Yanbin He , Geethu Joseph

Sparse autoencoders (SAEs) have received considerable recent attention as tools for mechanistic interpretability, showing success at extracting interpretable features even from very large LLMs. However, this research has been largely…

机器学习 · 计算机科学 2025-05-20 Jeremy Budd , Javier Ideami , Benjamin Macdowall Rynne , Keith Duggar , Randall Balestriero

Pathology plays an important role in disease diagnosis, treatment decision-making and drug development. Previous works on interpretability for machine learning models on pathology images have revolved around methods such as attention value…

Ultra-high-dimensional tensor predictors are increasingly common in neuroimaging and other biomedical studies, yet existing methods rarely integrate continuous, count, and binary responses in a single coherent model. We present a Bayesian…

统计方法学 · 统计学 2025-05-21 Shao-Hsuan Wang , Hsin-Hsiung Huang

RFdiffusion is a popular and well-established model for generation of protein structures. However, this generative process offers limited insight into its internal representations and how they contribute to the final protein structure.…

定量方法 · 定量生物学 2025-12-01 Wojciech Zarzecki , Paulina Szymczak , Ewa Szczurek , Kamil Deja

Adapting foundation models for specific purposes has become a standard approach to build machine learning systems for downstream applications. Yet, it is an open question which mechanisms take place during adaptation. Here we develop a new…

计算机视觉与模式识别 · 计算机科学 2025-03-24 Hyesu Lim , Jinho Choi , Jaegul Choo , Steffen Schneider

Dictionary learning and component analysis models are fundamental for learning compact representations that are relevant to a given task (feature extraction, dimensionality reduction, denoising, etc.). The model complexity is encoded by…

机器学习 · 统计学 2018-11-13 Mehdi Bahri , Yannis Panagakis , Stefanos Zafeiriou