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Stochastic models are often used to help understand the behavior of intracellular biochemical processes. The most common such models are continuous time Markov chains (CTMCs). Parametric sensitivities, which are derivatives of expectations…

数值分析 · 数学 2014-11-19 Elizabeth Skubak Wolf , David F. Anderson

While traditional data-management systems focus on evaluating single, ad-hoc queries over static data sets in a centralized setting, several emerging applications require (possibly, continuous) answers to queries on dynamic data that is…

数据库 · 计算机科学 2015-03-20 Odysseas Papapetrou , Minos Garofalakis , Antonios Deligiannakis

Maximum entropy estimation is of broad interest for inferring properties of systems across many different disciplines. In this work, we significantly extend a technique we previously introduced for estimating the maximum entropy of a set of…

数据分析、统计与概率 · 物理学 2016-01-05 Elliot A. Martin , Jaroslav Hlinka , Alexander Meinke , Filip Děchtěrenko , Jörn Davidsen

Information geometry and inductive inference methods can be used to model dynamical systems in terms of their probabilistic description on curved statistical manifolds. In this article, we present a formal conceptual reexamination of the…

数学物理 · 物理学 2010-11-29 C. Cafaro , A. Giffin , S. A. Ali , D. -H. Kim

The parameters of a discrete stationary Markov model are transition probabilities between states. Traditionally, data consist in sequences of observed states for a given number of individuals over the whole observation period. In such a…

统计计算 · 统计学 2012-04-30 Alberto Pasanisi , Shuai Fu , Nicolas Bousquet

Predictability of behavior has emerged an an important characteristic in many fields including biology, medicine, and marketing. Behavior can be recorded as a sequence of actions performed by an individual over a given time period. This…

统计方法学 · 统计学 2017-11-13 Brian Vegetabile , Jenny Molet , Tallie Z. Baram , Hal Stern

During a spontaneous change, a macroscopic physical system will evolve towards a macro-state with more realizations. This observation is at the basis of the Statistical Mechanical version of the Second Law of Thermodynamics, and it provides…

统计力学 · 物理学 2020-04-22 Mengjie Zu , Arunkumar Bupathy , Daan Frenkel , Srikanth Sastry

Event sequences often emerge in data mining. Modeling these sequences presents two main challenges: methodological and computational. Methodologically, event sequences are non-uniform and sparse, making traditional models unsuitable.…

Informed Markov chain Monte Carlo (MCMC) methods have been proposed as scalable solutions to Bayesian posterior computation on high-dimensional discrete state spaces, but theoretical results about their convergence behavior in general…

统计计算 · 统计学 2022-02-01 Quan Zhou , Aaron Smith

The large volumes of data generated by human activities such as online purchases, health records, spatial mobility etc. are stored as a sequence of events over a continuous time. Learning deep learning methods over such sequences is a…

机器学习 · 计算机科学 2021-11-16 Vinayak Gupta

Biochemical signaling cascades transmit intracellular information while dissipating energy under nonequilibrium conditions. We model a cascade as a code string and apply information-entropy ideas to quantify an optimal transmission rate. A…

分子网络 · 定量生物学 2026-01-21 Tatsuaki Tsuruyama

Complex systems are increasingly being viewed as distributed information processing systems, particularly in the domains of computational neuroscience, bioinformatics and Artificial Life. This trend has resulted in a strong uptake in the…

信息论 · 计算机科学 2014-12-04 Joseph T. Lizier

Since Estimation of Distribution Algorithms (EDA) were proposed, many attempts have been made to improve EDAs' performance in the context of global optimization. So far, the studies or applications of multivariate probabilistic model based…

神经与进化计算 · 计算机科学 2011-11-10 Weishan Dong , Tianshi Chen , Peter Tino , Xin Yao

Discrete flow models offer a powerful framework for learning distributions over discrete state spaces and have demonstrated superior performance compared to the discrete diffusion models. However, their convergence properties and error…

统计理论 · 数学 2026-05-27 Zhengyan Wan , Yidong Ouyang , Qiang Yao , Liyan Xie , Fang Fang , Hongyuan Zha , Guang Cheng

This manuscript investigates the information-theoretic limits of integrated sensing and communications (ISAC), aiming for simultaneous reliable communication and precise channel state estimation. We model such a system with a…

信息论 · 计算机科学 2024-03-29 Xinyang Li , Vlad C. Andrei , Aladin Djuhera , Ullrich J. Mönich , Holger Boche

While deep neural networks (NN) significantly advance image compressed sensing (CS) by improving reconstruction quality, the necessity of training current CS NNs from scratch constrains their effectiveness and hampers rapid deployment.…

计算机视觉与模式识别 · 计算机科学 2025-02-04 Bin Chen , Zhenyu Zhang , Weiqi Li , Chen Zhao , Jiwen Yu , Shijie Zhao , Jie Chen , Jian Zhang

Applications of stochastic models often involve the evaluation of steady-state performance, which requires solving a set of balance equations. In most cases of interest, the number of equations is infinite or even uncountable. As a result,…

最优化与控制 · 数学 2022-04-08 Shukai Li , Sanjay Mehrotra

Markov chains are a natural and well understood tool for describing one-dimensional patterns in time or space. We show how to infer $k$-th order Markov chains, for arbitrary $k$, from finite data by applying Bayesian methods to both…

统计理论 · 数学 2009-11-13 Christopher C. Strelioff , James P. Crutchfield , Alfred W. Hubler

In this work, we introduce a new methodology for inferring the interaction structure of discrete valued time series which are Poisson distributed. While most related methods are premised on continuous state stochastic processes, in fact,…

统计方法学 · 统计学 2021-08-12 Jeremie Fish , Jie Sun , Erik Bollt

This paper studies the problem of embedding very large information networks into low-dimensional vector spaces, which is useful in many tasks such as visualization, node classification, and link prediction. Most existing graph embedding…

机器学习 · 计算机科学 2015-03-13 Jian Tang , Meng Qu , Mingzhe Wang , Ming Zhang , Jun Yan , Qiaozhu Mei