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Message Passing Neural Networks (MPNNs) hold a key position in machine learning on graphs, but they struggle with unintended behaviors, such as over-smoothing and over-squashing, due to irregular data structures. The observation and…

机器学习 · 计算机科学 2025-08-26 Junhyun Lee , Veronika Thost , Bumsoo Kim , Jaewoo Kang , Tengfei Ma

Despite the recent success of graph neural networks (GNN), common architectures often exhibit significant limitations, including sensitivity to oversmoothing, long-range dependencies, and spurious edges, e.g., as can occur as a result of…

机器学习 · 计算机科学 2021-12-06 Yongyi Yang , Tang Liu , Yangkun Wang , Jinjing Zhou , Quan Gan , Zhewei Wei , Zheng Zhang , Zengfeng Huang , David Wipf

Most graph neural networks (GNNs) use the message passing paradigm, in which node features are propagated on the input graph. Recent works pointed to the distortion of information flowing from distant nodes as a factor limiting the…

Structural balance theory assumes triads in networks to gravitate towards stable configurations. The theory has been verified for undirected graphs. Since real-world networks are often directed, we introduce a novel method for considering…

社会与信息网络 · 计算机科学 2020-06-05 Ly Dinh , Rezvaneh Rezapour , Lan Jiang , Jana Diesner

Graph Neural Networks (GNNs) have achieved promising performance on a wide range of graph-based tasks. Despite their success, one severe limitation of GNNs is the over-smoothing issue (indistinguishable representations of nodes in different…

机器学习 · 计算机科学 2019-11-19 Deli Chen , Yankai Lin , Wei Li , Peng Li , Jie Zhou , Xu Sun

While Graph Neural Networks (GNNs) have achieved enormous success in multiple graph analytical tasks, modern variants mostly rely on the strong inductive bias of homophily. However, real-world networks typically exhibit both homophilic and…

机器学习 · 计算机科学 2024-09-18 Jingwei Guo , Kaizhu Huang , Rui Zhang , Xinping Yi

Subgraph GNNs enhance message-passing GNNs expressivity by representing graphs as sets of subgraphs, demonstrating impressive performance across various tasks. However, their scalability is hindered by the need to process large numbers of…

机器学习 · 计算机科学 2025-06-02 Guy Bar-Shalom , Yam Eitan , Fabrizio Frasca , Haggai Maron

Over-smoothing in Graph Neural Networks (GNNs) causes collapse in distinct node features, particularly on heterophilic graphs where adjacent nodes often have dissimilar labels. Although sheaf neural networks partially mitigate this problem,…

机器学习 · 计算机科学 2025-11-11 Yoonhyuk Choi , Jiho Choi , Chong-Kwon Kim

Graph neural networks (GNNs) have been widely investigated in the field of semi-supervised graph machine learning. Most methods fail to exploit adequate graph information when labeled data is limited, leading to the problem of…

机器学习 · 计算机科学 2023-03-15 Linxuan Song , Wenxuan Tu , Sihang Zhou , Xinwang Liu , En Zhu

Signed networks, characterized by edges labeled as either positive or negative, offer nuanced insights into interaction dynamics beyond the capabilities of unsigned graphs. Central to this is the task of identifying the maximum balanced…

社会与信息网络 · 计算机科学 2024-06-18 Jingbang Chen , Qiuyang Mang , Hangrui Zhou , Richard Peng , Yu Gao , Chenhao Ma

Graph Neural Networks (GNNs) have emerged as a promising tool to handle data exhibiting an irregular structure. However, most GNN architectures perform well on homophilic datasets, where the labels of neighboring nodes are likely to be the…

机器学习 · 计算机科学 2024-12-03 Victor M. Tenorio , Madeline Navarro , Samuel Rey , Santiago Segarra , Antonio G. Marques

Over-smoothing and over-squashing have been extensively studied in the literature on Graph Neural Networks (GNNs) over the past years. We challenge this prevailing focus in GNN research, arguing that these phenomena are less critical for…

机器学习 · 统计学 2026-01-13 Niklas Kormann , Benjamin Doerr , Johannes F. Lutzeyer

Graph neural networks (GNNs) integrate deep architectures and topological structure modeling in an effective way. However, the performance of existing GNNs would decrease significantly when they stack many layers, because of the…

机器学习 · 计算机科学 2021-07-07 Kaixiong Zhou , Xiao Huang , Daochen Zha , Rui Chen , Li Li , Soo-Hyun Choi , Xia Hu

We study the problem of semi-supervised learning on graphs, for which graph neural networks (GNNs) have been extensively explored. However, most existing GNNs inherently suffer from the limitations of over-smoothing, non-robustness, and…

机器学习 · 计算机科学 2021-09-22 Wenzheng Feng , Jie Zhang , Yuxiao Dong , Yu Han , Huanbo Luan , Qian Xu , Qiang Yang , Evgeny Kharlamov , Jie Tang

Graph Neural Networks (GNNs) suffer from over-smoothing in deep architectures and expressiveness bounded by the 1-Weisfeiler-Leman (1-WL) test. We adapt Manifold-Constrained Hyper-Connections (\mhc)~\citep{xie2025mhc}, recently proposed for…

机器学习 · 计算机科学 2026-01-07 Subhankar Mishra

In recent years, Graph Convolutional Networks (GCNs) have gained popularity for their exceptional ability to process graph-structured data. Existing GCN-based approaches typically employ a shallow model architecture due to the…

机器学习 · 计算机科学 2025-04-22 Jielong Lu , Zhihao Wu , Zhiling Cai , Yueyang Pi , Shiping Wang

This paper presents a novel graph-based deep learning model for tasks involving relations between two nodes (edge-centric tasks), where the focus lies on predicting relationships and interactions between pairs of nodes rather than node…

机器学习 · 计算机科学 2025-07-08 Eugenio Borzone , Leandro Di Persia , Matias Gerard

Graph Neural Networks (GNNs) face fundamental limitations in expressivity and capturing structural heterogeneity. Standard message-passing architectures are constrained by the 1-dimensional Weisfeiler-Leman (1-WL) test, unable to…

机器学习 · 计算机科学 2026-05-19 Asela Hevapathige , Ahad N. Zehmakan , Asiri Wijesinghe , Saman Halgamuge

Graph neural networks (GNNs) have shown great potential in learning on graphs, but they are known to perform sub-optimally on link prediction tasks. Existing GNNs are primarily designed to learn node-wise representations and usually fail to…

机器学习 · 计算机科学 2025-06-17 Tianyi Zhang , Haoteng Yin , Rongzhe Wei , Pan Li , Anshumali Shrivastava

Transfer learning aims to enhance performance on a target task by using knowledge from related tasks. However, when the source and target tasks are not closely aligned, it can lead to reduced performance, known as negative transfer. Unlike…

机器学习 · 计算机科学 2024-05-07 Zehong Wang , Zheyuan Zhang , Chuxu Zhang , Yanfang Ye