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Protein phosphorylation involves the reversible modification of a protein (substrate) residue by another protein (kinase). Liquid chromatography-mass spectrometry studies are rapidly generating massive protein phosphorylation datasets…

Protein phosphorylation is a reversible post-translational modification commonly used by cell signaling networks to transmit information about the extracellular environment into intracellular organelles for the regulation of the activity…

分子网络 · 定量生物学 2016-11-17 Marylens Hernandez , Alexander Lachmann , Shan Zhao , Kunhong Xiao , Avi Ma'ayan

Generating large ensembles of candidate conformations is standard for improving biomolecular structure prediction. Yet aimless sampling is inefficient and costly, producing many redundant conformations with limited diversity, so additional…

生物大分子 · 定量生物学 2025-10-21 Lihang Liu , Yang Liu , Xianbin Ye , Shanzhuo Zhang , Yuxin Li , Kunrui Zhu , Yang Xue , Xiaonan Zhang , Xiaomin Fang

Spatial transcriptomics (ST) bridges gene expression and tissue morphology but faces clinical adoption barriers due to technical complexity and prohibitive costs. While computational methods predict gene expression from H&E-stained…

计算机视觉与模式识别 · 计算机科学 2025-11-20 Ziqiao Weng , Yaoyu Fang , Jiahe Qian , Xinkun Wang , Lee AD Cooper , Weidong Cai , Bo Zhou

Pathology foundation models (PFMs) have demonstrated strong representational capabilities through self-supervised pre-training on large-scale, unannotated histopathology image datasets. However, their diverse yet opaque pretraining…

计算机视觉与模式识别 · 计算机科学 2025-09-15 Yuxiang Xiao , Yang Hu , Bin Li , Tianyang Zhang , Zexi Li , Huazhu Fu , Jens Rittscher , Kaixiang Yang

High-density biosignal recordings are critical for neural decoding and clinical monitoring, yet real-world deployments often rely on low-density (LD) montages due to hardware and operational constraints. This motivates spatial…

多媒体 · 计算机科学 2026-02-20 Hongjun Liu , Leyu Zhou , Zijianghao Yang , Rujun Han , Shitong Duan , Kuanjian Tang , Chao Yao

We propose POse-guided SElective Fusion (POSEFusion), a single-view human volumetric capture method that leverages tracking-based methods and tracking-free inference to achieve high-fidelity and dynamic 3D reconstruction. By contributing a…

计算机视觉与模式识别 · 计算机科学 2021-03-30 Zhe Li , Tao Yu , Zerong Zheng , Kaiwen Guo , Yebin Liu

Proteins play essential roles in nature, from catalyzing biochemical reactions to binding specific targets. Advances in protein engineering have the potential to revolutionize biotechnology and healthcare by designing proteins with tailored…

生物大分子 · 定量生物学 2025-05-05 Hocheol Lim , Geon-Ho Lee , Kyoung Tai No

There exist challenging problems in 3D human pose estimation mission, such as poor performance caused by occlusion and self-occlusion. Recently, IMU-vision sensor fusion is regarded as valuable for solving these problems. However, previous…

计算机视觉与模式识别 · 计算机科学 2022-08-26 Yiming Bao , Xu Zhao , Dahong Qian

Software vulnerability detection can be formulated as a binary classification problem that determines whether a given code snippet contains security defects. Existing multimodal methods typically fuse Natural Code Sequence (NCS)…

软件工程 · 计算机科学 2026-04-24 Yun Bian , Yi Chen , HaiQuan Wang , ShiHao Li , Zhe Cui

Existing monocular 3D pose estimation methods primarily rely on joint positional features, while overlooking intrinsic directional and angular correlations within the skeleton. As a result, they often produce implausible poses under joint…

计算机视觉与模式识别 · 计算机科学 2025-06-18 Ming Xu , Xu Zhang

Semantic location prediction aims to derive meaningful location insights from multimodal social media posts, offering a more contextual understanding of daily activities than using GPS coordinates. This task faces significant challenges due…

计算机视觉与模式识别 · 计算机科学 2024-06-25 Zhizhen Zhang , Ning Wang , Haojie Li , Zhihui Wang

We introduce a novel deep learning framework for the automated staging of spheno-occipital synchondrosis (SOS) fusion, a critical diagnostic marker in both orthodontics and forensic anthropology. Our approach leverages a dual-model…

计算机视觉与模式识别 · 计算机科学 2025-05-29 Omid Halimi Milani , Amanda Nikho , Marouane Tliba , Lauren Mills , Ahmet Enis Cetin , Mohammed H Elnagar

Sepsis accounts for nearly 20% of global ICU admissions, yet conventional prediction models often fail to effectively integrate heterogeneous data streams, remaining either siloed by modality or reliant on brittle early fusion. In this…

机器学习 · 计算机科学 2025-12-18 Ryan Cartularo

We present Semantic-Aware Guided Exploration, SAGE, a system for open-vocabulary exploration in unknown 3D indoor environments that preserves coverage-oriented behavior while allowing semantic cues to reprioritize frontier selection.…

机器人学 · 计算机科学 2026-05-25 Nitin Vegesna , Avideh Zakhor

Engineered image-based biomarkers offer a clinically interpretable alternative to black-box AI in computational pathology, yet their discovery remains largely intuition-driven, guided by fragmented literature rather than rigorous biological…

Feature selection is essential for high-dimensional biomedical data, enabling stronger predictive performance, reduced computational cost, and improved interpretability in precision medicine applications. Existing approaches face notable…

机器学习 · 计算机科学 2026-01-07 Xiaoyan Sun , Qingyu Meng , Yalu Wen

Deep learning has been widely used for protein engineering. However, it is limited by the lack of sufficient experimental data to train an accurate model for predicting the functional fitness of high-order mutants. Here, we develop SESNet,…

定量方法 · 定量生物学 2023-04-10 Mingchen Li , Liqi Kang , Yi Xiong , Yu Guang Wang , Guisheng Fan , Pan Tan , Liang Hong

Search-Augmented Generative Engines (SAGE) have emerged as a new paradigm for information access, bridging web-scale retrieval with generative capabilities to deliver synthesized answers. This shift has fundamentally reshaped how web…

信息检索 · 计算机科学 2026-02-13 Sunghwan Kim , Wooseok Jeong , Serin Kim , Sangam Lee , Dongha Lee

The advancement of machine learning and the availability of large-scale reaction datasets have accelerated the development of data-driven models for computer-aided synthesis planning (CASP) in the past decade. Here, we detail the newest…

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