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相关论文: Exploring Large Protein Language Models in Constra…

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Recently, Large Language Models (LLM) have demonstrated impressive capability to solve a wide range of tasks. However, despite their success across various tasks, no prior work has investigated their capability in the biomedical domain yet.…

计算与语言 · 计算机科学 2024-02-21 Israt Jahan , Md Tahmid Rahman Laskar , Chun Peng , Jimmy Huang

The entry of large language models (LLMs) into research and commercial spaces has led to a trend of ever-larger models, with initial promises of generalisability, followed by a widespread desire to downsize and create specialised models…

Large language models (LLMs) have demonstrated significant success in natural language processing (NLP) tasks and have shown promising results in other domains such as protein sequence generation. However, there remain salient differences…

生物大分子 · 定量生物学 2024-11-12 Aayush Shah , Shankar Jayaratnam

Precise estimation of downstream performance in large language models (LLMs) prior to training is essential for guiding their development process. Scaling laws analysis utilizes the statistics of a series of significantly smaller sampling…

计算与语言 · 计算机科学 2025-04-09 Yangyi Chen , Binxuan Huang , Yifan Gao , Zhengyang Wang , Jingfeng Yang , Heng Ji

We consider the protein sequence engineering problem, which aims to find protein sequences with high fitness levels, starting from a given wild-type sequence. Directed evolution has been a dominating paradigm in this field which has an…

机器学习 · 计算机科学 2025-01-20 Yinkai Wang , Jiaxing He , Yuanqi Du , Xiaohui Chen , Jianan Canal Li , Li-Ping Liu , Xiaolin Xu , Soha Hassoun

Recent advancements in Contrastive Language-Image Pre-training (CLIP) have demonstrated notable success in self-supervised representation learning across various tasks. However, the existing CLIP-like approaches often demand extensive GPU…

计算机视觉与模式识别 · 计算机科学 2024-07-31 Yuexi Du , Brian Chang , Nicha C. Dvornek

The prediction of protein structures from sequences is an important task for function prediction, drug design, and related biological processes understanding. Recent advances have proved the power of language models (LMs) in processing the…

定量方法 · 定量生物学 2022-12-01 Bozhen Hu , Jun Xia , Jiangbin Zheng , Cheng Tan , Yufei Huang , Yongjie Xu , Stan Z. Li

This study presents FiLLM, a Filipino-optimized large language model, designed to enhance natural language processing (NLP) capabilities in the Filipino language. Built upon the SeaLLM-7B 2.5 model, FiLLM leverages Low-Rank Adaptation…

计算与语言 · 计算机科学 2025-05-27 Carlos Jude G. Maminta , Isaiah Job Enriquez , Deandre Nigel Nunez , Michael B. Dela Fuente

Current vision-language foundation models, such as CLIP, have recently shown significant improvement in performance across various downstream tasks. However, whether such foundation models significantly improve more complex fine-grained…

计算机视觉与模式识别 · 计算机科学 2024-10-23 Mahmoud Ali , Di Yang , François Brémond

Reinforcement learning (RL) has become a key technique for enhancing the reasoning abilities of large language models (LLMs), with policy-gradient algorithms dominating the post-training stage because of their efficiency and effectiveness.…

人工智能 · 计算机科学 2025-08-08 Chang Tian , Matthew B. Blaschko , Mingzhe Xing , Xiuxing Li , Yinliang Yue , Marie-Francine Moens

Protein language models are a powerful tool for learning protein representations through pre-training on vast protein sequence datasets. However, traditional protein language models lack explicit structural supervision, despite its…

生物大分子 · 定量生物学 2024-02-09 Zuobai Zhang , Jiarui Lu , Vijil Chenthamarakshan , Aurélie Lozano , Payel Das , Jian Tang

Large vision-language contrastive models (VLCMs), such as CLIP, have become foundational, demonstrating remarkable success across a variety of downstream tasks. Despite their advantages, these models, akin to other foundational systems,…

计算机视觉与模式识别 · 计算机科学 2025-07-10 Haocheng Dai , Sarang Joshi

Understanding the relationships between protein sequence, structure and function is a long-standing biological challenge with manifold implications from drug design to our understanding of evolution. Recently, protein language models have…

定量方法 · 定量生物学 2024-01-29 Dexiong Chen , Philip Hartout , Paolo Pellizzoni , Carlos Oliver , Karsten Borgwardt

Large Language Models (LLMs) have shown impressive capabilities in many scenarios, but their performance depends, in part, on the choice of prompt. Past research has focused on optimizing prompts specific to a task. However, much less…

计算与语言 · 计算机科学 2026-04-07 Lechen Zhang , Tolga Ergen , Lajanugen Logeswaran , Moontae Lee , David Jurgens

This paper investigates the performance of the Contrastive Language-Image Pre-training (CLIP) when scaled down to limited computation budgets. We explore CLIP along three dimensions: data, architecture, and training strategies. With regards…

计算机视觉与模式识别 · 计算机科学 2024-04-17 Zichao Li , Cihang Xie , Ekin Dogus Cubuk

Large language models (LLMs) have shown promising capabilities in visually interpreting medical time-series data. However, their general-purpose design can limit domain-specific precision, and the proprietary nature of many models poses…

CLIP has become a cornerstone of multimodal representation learning, yet improving its performance typically requires a prohibitively costly process of training from scratch on billions of samples. We ask a different question: Can we…

计算机视觉与模式识别 · 计算机科学 2026-01-16 Anant Mehta , Xiyuan Wei , Xingyu Chen , Tianbao Yang

CLIP is a seminal multimodal model that maps images and text into a shared representation space through contrastive learning on billions of image-caption pairs. Inspired by the rapid progress of large language models (LLMs), we investigate…

计算机视觉与模式识别 · 计算机科学 2026-02-26 Weiquan Huang , Aoqi Wu , Yifan Yang , Xufang Luo , Yuqing Yang , Usman Naseem , Chunyu Wang , Chunyu Wang , Qi Dai , Xiyang Dai , Dongdong Chen , Chong Luo , Lili Qiu , Liang Hu

Large Audio-Language Models (LALMs) have demonstrated strong performance in audio understanding and generation. Yet, our extensive benchmarking reveals that their behavior is largely generic (e.g., summarizing spoken content) and fails to…

计算与语言 · 计算机科学 2026-01-08 Yuwen Wang , Xinyuan Qian , Tian-Hao Zhang , Jiaran Gao , Yuchen Pan , Xin Wang , Zhou Pan , Chen Wei , Yiming Wang

Recent advances in Protein Language Models (PLMs) have transformed protein engineering, yet unlike their counterparts in Natural Language Processing (NLP), current PLMs exhibit a fundamental limitation: they excel in either Protein Language…

计算工程、金融与科学 · 计算机科学 2025-09-16 Liuzhenghao Lv , Zongying Lin , Hao Li , Yuyang Liu , Jiaxi Cui , Calvin Yu-Chian Chen , Li Yuan , Yonghong Tian