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scRNA-seq clustering is a critical task for analyzing single-cell RNA sequencing (scRNA-seq) data, as it groups cells with similar gene expression profiles. Transformers, as powerful foundational models, have been applied to scRNA-seq…

机器学习 · 计算机科学 2026-02-10 Zhuomin Liang , Liang Bai , Xian Yang

Accurate and timely traffic flow forecasting is crucial for intelligent transportation systems. This paper presents a novel deep learning model, the Spatial-Temporal Unified Graph Attention Network (STGAtt). By leveraging a unified graph…

机器学习 · 计算机科学 2025-08-26 Zhuding Liang , Jianxun Cui , Qingshuang Zeng , Feng Liu , Nenad Filipovic , Tijana Geroski

How to identify and characterize functional brain networks (BN) is fundamental to gain system-level insights into the mechanisms of brain organizational architecture. Current functional magnetic resonance (fMRI) analysis highly relies on…

神经元与认知 · 定量生物学 2022-06-28 Xiaowei Yu , Lu Zhang , Lin Zhao , Yanjun Lyu , Tianming Liu , Dajiang Zhu

In this study, we present the Graph Sub-Graph Network (GSN), a novel hybrid image classification model merging the strengths of Convolutional Neural Networks (CNNs) for feature extraction and Graph Neural Networks (GNNs) for structural…

计算机视觉与模式识别 · 计算机科学 2024-10-01 Aryan Singh , Pepijn Van de Ven , Ciarán Eising , Patrick Denny

Functional magnetic resonance imaging (fMRI) is a powerful tool for probing brain function, yet reliable clinical diagnosis is hampered by low signal-to-noise ratios, inter-subject variability, and the limited frequency awareness of…

计算机视觉与模式识别 · 计算机科学 2026-03-03 Junhao Jia , Yifei Sun , Yunyou Liu , Cheng Yang , Changmiao Wang , Feiwei Qin , Yong Peng , Wenwen Min

Sleep disorder is a serious global public health issue, with cognitive-emotional dysfunction being a core symptom. The analysis of multimodal MRI data provides an effective method for detecting sleep deprivation-induced neural network…

神经元与认知 · 定量生物学 2025-12-02 Mengyuan Liu , Jing Hu , Zhenzhen Ru , Ruomeng Quan , Xu Zhang , Ning Qiang , Jin Li

The traditional methods for detecting autism spectrum disorder (ASD) are expensive, subjective, and time-consuming, often taking years for a diagnosis, with many children growing well into adolescence and even adulthood before finally…

神经元与认知 · 定量生物学 2022-11-15 James Orme-Rogers , Ajitesh Srivastava

Autism spectrum disorder (ASD) is a complex neurodevelopmental condition characterized by atypical functional brain connectivity and subtle structural alterations. rs-fMRI has been widely used to identify disruptions in large-scale brain…

计算机视觉与模式识别 · 计算机科学 2026-03-17 Ansar Rahman , Hassan Shojaee-Mend , Sepideh Hatamikia

Accurate assessment of patient actions plays a crucial role in healthcare as it contributes significantly to disease progression monitoring and treatment effectiveness. However, traditional approaches to assess patient actions often rely on…

计算机视觉与模式识别 · 计算机科学 2025-02-26 Youssef Mourchid , Rim Slama

Traffic forecasting is a cornerstone of smart city management, enabling efficient resource allocation and transportation planning. Deep learning, with its ability to capture complex nonlinear patterns in spatiotemporal (ST) data, has…

机器学习 · 计算机科学 2024-10-16 Hongjun Wang , Jiyuan Chen , Tong Pan , Zheng Dong , Lingyu Zhang , Renhe Jiang , Xuan Song

Resting-state functional MRI (rsfMRI) yields functional connectomes that can serve as cognitive fingerprints of individuals. Connectomic fingerprints have proven useful in many machine learning tasks, such as predicting subject-specific…

机器学习 · 计算机科学 2020-08-10 Gia H. Ngo , Meenakshi Khosla , Keith Jamison , Amy Kuceyeski , Mert R. Sabuncu

Single-cell RNA sequencing (scRNA-seq) data analysis is pivotal for understanding cellular heterogeneity. However, the high sparsity and complex noise patterns inherent in scRNA-seq data present significant challenges for traditional…

基因组学 · 定量生物学 2024-08-13 Wenwen Min , Zhen Wang , Fangfang Zhu , Taosheng Xu , Shunfang Wang

Functional magnetic resonance imaging (fMRI) has become instrumental in researching brain function. One application of fMRI is investigating potential neural features that distinguish people with autism spectrum disorder (ASD) from healthy…

图像与视频处理 · 电气工程与系统科学 2024-12-19 Sjir J. C. Schielen , Jesper Pilmeyer , Albert P. Aldenkamp , Danny Ruijters , Svitlana Zinger

Graph Signal Processing has become a very useful framework for signal operations and representations defined on irregular domains. Exploiting transformations that are defined on graph models can be highly beneficial when the graph encodes…

机器学习 · 计算机科学 2019-10-14 Yusuf Pilavci , Nicolas Farrugia

This study investigated age-related changes in functional connectivity using resting-state fMRI and explored the efficacy of traditional deep learning for classifying brain developmental stages (BDS). Functional connectivity was assessed…

神经元与认知 · 定量生物学 2025-03-28 Prerna Singh , Kuldeep Singh Yadav , Lalan Kumar , Tapan Kumar Gandhi

For pursuing accurate skeleton-based action recognition, most prior methods use the strategy of combining Graph Convolution Networks (GCNs) with attention-based methods in a serial way. However, they regard the human skeleton as a complete…

计算机视觉与模式识别 · 计算机科学 2023-01-30 Chen Pang , Xuequan Lu , Lei Lyu

Understanding the dynamic reorganization of brain networks is critical for predicting cognitive decline, neurological progression, and individual variability in clinical outcomes. This work proposes a multimodal graph neural network…

机器学习 · 计算机科学 2026-02-11 Preksha Girish , Rachana Mysore , Kiran K. N. , Hiranmayee R. , Shipra Prashanth , Shrey Kumar

Several brain disorders can be detected by observing alterations in the brain's structural and functional connectivities. Neurological findings suggest that early diagnosis of brain disorders, such as mild cognitive impairment (MCI), can…

神经元与认知 · 定量生物学 2021-10-22 Alpay Tekin , Ahmed Nebli , Islem Rekik

This paper studies the link between resting-state functional connectivity (FC), measured by the correlations of the fMRI BOLD time courses, and structural connectivity (SC), estimated through fiber tractography. Instead of a static analysis…

Graph Transformers, which incorporate self-attention and positional encoding, have recently emerged as a powerful architecture for various graph learning tasks. Despite their impressive performance, the complex non-convex interactions…

机器学习 · 计算机科学 2024-06-05 Hongkang Li , Meng Wang , Tengfei Ma , Sijia Liu , Zaixi Zhang , Pin-Yu Chen