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相关论文: MF-LAL: Drug Compound Generation Using Multi-Fidel…

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Predicting the binding structure of a small molecule ligand to a protein -- a task known as molecular docking -- is critical to drug design. Recent deep learning methods that treat docking as a regression problem have decreased runtime…

生物大分子 · 定量生物学 2023-02-14 Gabriele Corso , Hannes Stärk , Bowen Jing , Regina Barzilay , Tommi Jaakkola

The development of accurate and transferable machine learning (ML) potentials for predicting molecular energetics is a challenging task. The process of data generation to train such ML potentials is a task neither well understood nor…

计算物理 · 物理学 2018-05-25 Justin S. Smith , Ben Nebgen , Nicholas Lubbers , Olexandr Isayev , Adrian E. Roitberg

In open-domain dialogue systems, generative approaches have attracted much attention for response generation. However, existing methods are heavily plagued by generating safe responses and unnatural responses. To alleviate these two…

计算与语言 · 计算机科学 2019-06-25 Shaobo Cui , Rongzhong Lian , Di Jiang , Yuanfeng Song , Siqi Bao , Yong Jiang

The generation of molecules with desired properties has become increasingly popular, revolutionizing the way scientists design molecular structures and providing valuable support for chemical and drug design. However, despite the potential…

机器学习 · 计算机科学 2024-03-05 Yin Fang , Ningyu Zhang , Zhuo Chen , Lingbing Guo , Xiaohui Fan , Huajun Chen

Recent approaches have utilized self-supervised auxiliary tasks as representation learning to improve the performance and sample efficiency of vision-based reinforcement learning algorithms in single-agent settings. However, in multi-agent…

机器学习 · 计算机科学 2023-06-06 Haolin Song , Mingxiao Feng , Wengang Zhou , Houqiang Li

Text-guided molecular design is a key capability for AI-driven drug discovery, yet it remains challenging to map sequential natural-language instructions with non-linear molecular structures under strict chemical constraints. Most existing…

人工智能 · 计算机科学 2026-04-23 Wengyu Zhang , Xiao-Yong Wei , Qing Li

Multi-agent reinforcement learning for incomplete information environments has attracted extensive attention from researchers. However, due to the slow sample collection and poor sample exploration, there are still some problems in…

人工智能 · 计算机科学 2022-05-12 Shuhan Qi , Shuhao Zhang , Xiaohan Hou , Jiajia Zhang , Xuan Wang , Jing Xiao

Large Language Models (LLMs) have shown promising performance on diverse medical benchmarks, highlighting their potential in supporting real-world clinical tasks. Retrieval-Augmented Generation (RAG) has emerged as a key approach for…

计算与语言 · 计算机科学 2025-09-30 Kaishuai Xu , Wenjun Hou , Yi Cheng , Wenjie Li

Deep generative modeling to stochastically design small molecules is an emerging technology for accelerating drug discovery and development. However, one major issue in molecular generative models is their lower frequency of drug-like…

This work explores the challenging problem of molecule design by framing it as a conditional generative modeling task, where target biological properties or desired chemical constraints serve as conditioning variables. We propose the Latent…

Feature generation involves creating new features from raw data to capture complex relationships among the original features, improving model robustness and machine learning performance. Current methods using reinforcement learning for…

机器学习 · 计算机科学 2025-05-20 Wanfu Gao , Zengyao Man , Hanlin Pan , Kunpeng Liu

Active Learning (AL) promises to reduce annotation cost by prioritizing informative samples, yet its reliability is undermined when labels are noisy or when the data distribution shifts. In practice, annotators make mistakes, rare…

机器学习 · 计算机科学 2025-10-14 Atharv Goel , Sharat Agarwal , Saket Anand , Chetan Arora

Quantifying the impacts of air pollution on health and climate relies on key atmospheric particle properties such as toxicity and hygroscopicity. However, these properties typically require complex observational techniques or expensive…

机器学习 · 计算机科学 2026-02-13 Fei Jiang , Jiyang Xia , Junjie Yu , Mingfei Sun , Hugh Coe , David Topping , Dantong Liu , Zhenhui Jessie Li , Zhonghua Zheng

The primary objective of most lead optimization campaigns is to enhance the binding affinity of ligands. For large molecules such as antibodies, identifying mutations that enhance antibody affinity is particularly challenging due to the…

机器学习 · 计算机科学 2024-06-12 Alexandra Gessner , Sebastian W. Ober , Owen Vickery , Dino Oglić , Talip Uçar

Continual learning aims at incrementally acquiring new knowledge while not forgetting existing knowledge. To overcome catastrophic forgetting, methods are either rehearsal-based, i.e., store data examples from previous tasks for data…

机器学习 · 计算机科学 2024-04-02 Mingyang Wang , Heike Adel , Lukas Lange , Jannik Strötgen , Hinrich Schütze

Knowledge-grounded dialogue generation aims to mitigate the issue of text degeneration by incorporating external knowledge to supplement the context. However, the model often fails to internalize this information into responses in a…

计算与语言 · 计算机科学 2023-10-18 Chenxu Yang , Zheng Lin , Lanrui Wang , Chong Tian , Liang Pang , Jiangnan Li , Qirong Ho , Yanan Cao , Weiping Wang

This work introduces a method to tune a sequence-based generative model for molecular de novo design that through augmented episodic likelihood can learn to generate structures with certain specified desirable properties. We demonstrate how…

人工智能 · 计算机科学 2017-08-30 Marcus Olivecrona , Thomas Blaschke , Ola Engkvist , Hongming Chen

We study the problem of Reinforcement Learning (RL) using as few real-world samples as possible. A naive application of RL can be inefficient in large and continuous state spaces. We present two versions of Multi-Fidelity Reinforcement…

机器人学 · 计算机科学 2020-03-10 Varun Suryan , Nahush Gondhalekar , Pratap Tokekar

Traditional molecule generation methods often rely on sequence- or graph-based representations, which can limit their expressive power or require complex permutation-equivariant architectures. This paper introduces a novel paradigm for…

机器学习 · 计算机科学 2025-02-18 Van Khoa Nguyen , Maciej Falkiewicz , Giangiacomo Mercatali , Alexandros Kalousis

Structure-based drug design involves finding ligand molecules that exhibit structural and chemical complementarity to protein pockets. Deep generative methods have shown promise in proposing novel molecules from scratch (de-novo design),…

定量方法 · 定量生物学 2021-11-09 Pavol Drotár , Arian Rokkum Jamasb , Ben Day , Cătălina Cangea , Pietro Liò
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