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Colloidal particles of two types, driven in opposite directions, can segregate into lanes [Vissers et al. Soft Matter 7, 2352 (2011)]. This phenomenon can be reproduced by two-dimensional Brownian dynamics simulations of model particles…

统计力学 · 物理学 2016-08-31 Katherine Klymko , Phillip L. Geissler , Stephen Whitelam

The apparent difficulty of designing simple autocatalysts that grow exponentially in the absence of enzymes, external drives or ingenious internal mechanisms severely constrains scenarios for the emergence of evolution by natural selection…

生物大分子 · 定量生物学 2024-03-29 Yann Sakref , Olivier Rivoire

Classical Molecular Dynamics (MD) simulations provide insight on the properties of many soft-matter systems. In some situations it is interesting to model the creation of chemical bonds, a process that is not part of the MD framework. In…

软凝聚态物质 · 物理学 2015-04-02 Pierre de Buyl , Erik Nies

We develop a multi-scale approach to simulate hydrated nanobio systems under realistic condi- tions (e.g., nanoparticles and protein solutions at physiological conditions over time-scales up to hours). We combine atomistic simulations of…

软凝聚态物质 · 物理学 2017-07-05 Oriol Vilanova , Valentino Bianco , Giancarlo Franzese

DNA-coated colloids can self-assemble into an incredible diversity of crystal structures, but applications of this technology are limited by poor understanding and control over the dynamical crystallization pathways. To address this…

软凝聚态物质 · 物理学 2021-06-01 Alexander Hensley , William M. Jacobs , W. Benjamin Rogers

It has been argued that a central objective of nanotechnology is to make products inexpensively, and that self-replication is an effective approach to very low-cost manufacturing. The research presented here is intended to be a step towards…

多智能体系统 · 计算机科学 2020-08-20 Robert Ewaschuk , Peter D. Turney

This study presents a coarse-grained molecular dynamics simulation model to investigate the process of oxidative aging in polymers. The chemical aging effect is attributed to the auto-oxidation mechanism, which is initiated by radicals,…

软凝聚态物质 · 物理学 2023-11-28 Takato Ishida , Yuya Doi , Takashi Uneyama , Yuichi Masubuchi

Biomolecular condensates are formed via liquid-liquid phase separation of proteins, often together with nucleic acids, typically driven by interactions between low-affinity binding sites. The computational study of such condensates that…

软凝聚态物质 · 物理学 2025-01-16 Alena Taskina , Devika Magan , Simon Dannenberg , Stefan Klumpp

We consider a model for a quantum battery consisting of a collection of $N$ two-level atoms driven by a classical field and decaying to a common reservoir. In the extensive regime, where the energy $E$ scales as $N$ and the fluctuations…

量子物理 · 物理学 2024-12-17 Sagar Pokhrel , Julio Gea-Banacloche

Background: The idea that autocatalytic sets played an important role in the origin of life is not new. However, the likelihood of autocatalytic sets emerging spontaneously has long been debated. Recently, progress has been made along two…

分子网络 · 定量生物学 2012-11-16 Wim Hordijk , Mike Steel

The folding of biological macromolecules is a fundamental process of which we lack a full comprehension. Mostly studied in proteins and RNA, single-stranded DNA (ssDNA) also folds, at physiological salt conditions, by forming non-specific…

软凝聚态物质 · 物理学 2021-09-23 X. Viader Godoy , C. R. Pulido , B. Ibarra , M. Manosas , F. Ritort

In recent years there have been a number of proposals to utilize the specificity of DNA based interactions for potential applications in nanoscience. One interesting direction is the self-assembly of micro- and nanoparticle clusters using…

软凝聚态物质 · 物理学 2009-11-13 Nicholas A. Licata , Alexei V. Tkachenko

The design and operation of a differential Polymer Electrolyte Membrane (PEM) fuel cell is described. The fuel cell design is based on coupled Stirred Tank Reactors (STR); the gas phase in each reactor compartment was well mixed. The…

化学物理 · 物理学 2007-05-23 Jay Benziger , E. Chia , E. Karnas , J. Moxley , C. Teuscher , I. G. Kevrekidis

The collapsar engine behind long-duration gamma-ray bursts extracts the energy released from the rapid accretion of a collapsing star onto a stellar-massed black hole. In a collapsing star, this black hole can form in two ways: the direct…

天体物理学 · 物理学 2008-11-26 Christopher L. Fryer , Patrick A. Young , Aimee L. Hungerford

Five bimetallic electrocatalysts (ECs) including a carbon nitride (CN) support are synthesised through the pyrolysis of a solid precursor obtained through sol-gel and gel-plastic processes. The resulting ECs are characterised through…

化学物理 · 物理学 2018-05-23 Stefano Diodati , Enrico Negro , Keti Vezzu' Vito Di Noto , Silvia Gross

Human-created engines and evolutionarily optimized molecular motors exhibit sophisticated design in order to harvest chemical or thermal energy for generating unidirectional motion. The complexity of these motors makes their random…

统计力学 · 物理学 2017-05-10 Alexander Feigel , Asaf Rozen

Thermodynamic aspects of chemical reactions have a long history in the Physical Chemistry literature. In particular, biochemical cycles - the building-blocks of biochemical systems - require a source of energy to function. However, although…

定量方法 · 定量生物学 2018-08-14 Peter J. Gawthrop , Edmund J. Crampin

Inspired by recent successes using single-stranded DNA tiles to produce complex structures, we develop a two-step coarse-graining approach that uses detailed thermodynamic calculations with oxDNA, a nucleotide-based model of DNA, to…

Straight cracks are observed in thin coatings under residual tensile stress, resulting into the classical network pattern observed in china crockery, old paintings or dry mud. Here, we present a novel fracture mechanism where delamination…

软凝聚态物质 · 物理学 2014-08-22 Joel Marthelot , Benoit Roman , Jose Bico , Jeremie Teisseire , Davy Dalmas , Francisco Melo

The fabrication of synthetic self-propelled particles and the experimental investigations of their dynamics have stimulated interest in self-generated phoretic effects that propel nano- and micron-scale objects. Theoretical modeling of…

软凝聚态物质 · 物理学 2014-10-10 Pierre de Buyl , Raymond Kapral