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The recommendation of medication is a vital aspect of intelligent healthcare systems, as it involves prescribing the most suitable drugs based on a patient's specific health needs. Unfortunately, many sophisticated models currently in use…

信息检索 · 计算机科学 2025-01-28 Qidong Liu , Xian Wu , Xiangyu Zhao , Yuanshao Zhu , Zijian Zhang , Feng Tian , Yefeng Zheng

The advancement of Large Language Models (LLMs) has significantly impacted biomedical Natural Language Processing (NLP), enhancing tasks such as named entity recognition, relation extraction, event extraction, and text classification. In…

计算与语言 · 计算机科学 2025-03-04 Zaifu Zhan , Shuang Zhou , Huixue Zhou , Jiawen Deng , Yu Hou , Jeremy Yeung , Rui Zhang

This study applies Large Language Models (LLMs) to two foundational Electronic Health Record (EHR) data science tasks: structured data querying (using programmatic languages, Python/Pandas) and information extraction from unstructured…

计算与语言 · 计算机科学 2026-01-29 Juan Jose Rubio Jan , Jack Wu , Julia Ive

Generative pre-trained transformer (GPT) models have shown promise in clinical entity and relation extraction tasks because of their precise extraction and contextual understanding capability. In this work, we further leverage the Unified…

计算与语言 · 计算机科学 2024-07-16 Kriti Bhattarai , Inez Y. Oh , Zachary B. Abrams , Albert M. Lai

Large language models (LLMs) have shown remarkable capabilities in Natural Language Processing (NLP), especially in domains where labeled data is scarce or expensive, such as clinical domain. However, to unlock the clinical knowledge hidden…

计算与语言 · 计算机科学 2023-09-18 Sonish Sivarajkumar , Mark Kelley , Alyssa Samolyk-Mazzanti , Shyam Visweswaran , Yanshan Wang

The processing of entities in natural language is essential to many medical NLP systems. Unfortunately, existing datasets vastly under-represent the entities required to model public health relevant texts such as health advice often found…

计算与语言 · 计算机科学 2022-10-10 Joseph Gatto , Parker Seegmiller , Garrett Johnston , Sarah M. Preum

Biomedical triple extraction systems aim to automatically extract biomedical entities and relations between entities. The exploration of applying large language models (LLM) to triple extraction is still relatively unexplored. In this work,…

计算与语言 · 计算机科学 2024-04-30 Mingchen Li , Huixue Zhou , Rui Zhang

Natural language processing (NLP) is a key technology to extract important patient information from clinical narratives to support healthcare applications. The rapid development of large language models (LLMs) has revolutionized many NLP…

计算与语言 · 计算机科学 2025-09-08 Cheng Peng , Xinyu Dong , Mengxian Lyu , Daniel Paredes , Yaoyun Zhang , Yonghui Wu

Previous work on clinical relation extraction from free-text sentences leveraged information about semantic types from clinical knowledge bases as a part of entity representations. In this paper, we exploit additional evidence by also…

计算与语言 · 计算机科学 2025-03-10 Linh Le , Guido Zuccon , Gianluca Demartini , Genghong Zhao , Xia Zhang

In the rapidly evolving field of healthcare and beyond, the integration of generative AI in Electronic Health Records (EHRs) represents a pivotal advancement, addressing a critical gap in current information extraction techniques. This…

计算与语言 · 计算机科学 2024-06-03 Mohammed-Khalil Ghali , Abdelrahman Farrag , Hajar Sakai , Hicham El Baz , Yu Jin , Sarah Lam

Product attribute value extraction is a pivotal component in Natural Language Processing (NLP) and the contemporary e-commerce industry. The provision of precise product attribute values is fundamental in ensuring high-quality…

信息检索 · 计算机科学 2024-06-21 Chenhao Fang , Xiaohan Li , Zezhong Fan , Jianpeng Xu , Kaushiki Nag , Evren Korpeoglu , Sushant Kumar , Kannan Achan

Monitoring the administration of drugs and adverse drug reactions are key parts of pharmacovigilance. In this paper, we explore the extraction of drug mentions and drug-related information (reason for taking a drug, route, frequency,…

计算与语言 · 计算机科学 2019-09-24 Maksim Belousov , Nikola Milosevic , Ghada Alfattni , Haifa Alrdahi , Goran Nenadic

Recognizing spans of biomedical concepts and their types (e.g., drug or gene) in free text, often called biomedical named entity recognition (NER), is a basic component of information extraction (IE) pipelines. Without a strong NER…

计算与语言 · 计算机科学 2025-04-02 Motasem S Obeidat , Md Sultan Al Nahian , Ramakanth Kavuluru

Large Language Models (LLMs) are increasingly adopted for applications in healthcare, reaching the performance of domain experts on tasks such as question answering and document summarisation. Despite their success on these tasks, it is…

计算与语言 · 计算机科学 2025-05-20 Aishik Nagar , Viktor Schlegel , Thanh-Tung Nguyen , Hao Li , Yuping Wu , Kuluhan Binici , Stefan Winkler

Machine learning is widely utilized across various industries. Identifying the appropriate machine learning models and datasets for specific tasks is crucial for the effective industrial application of machine learning. However, this…

机器学习 · 计算机科学 2024-08-23 S. Nishio , H. Nonaka , N. Tsuchiya , A. Migita , Y. Banno , T. Hayashi , H. Sakaji , T. Sakumoto , K. Watabe

Literature analysis facilitates researchers to acquire a good understanding of the development of science and technology. The traditional literature analysis focuses largely on the literature metadata such as topics, authors, abstracts,…

人工智能 · 计算机科学 2021-01-29 Linlin Hou , Ji Zhang , Ou Wu , Ting Yu , Zhen Wang , Zhao Li , Jianliang Gao , Yingchun Ye , Rujing Yao

Large Language Models (LLMs) demonstrate remarkable versatility in various NLP tasks but encounter distinct challenges in biomedical due to the complexities of language and data scarcity. This paper investigates LLMs application in the…

Aligning terminological resources, including ontologies, controlled vocabularies, taxonomies, and value sets is a critical part of data integration in many domains such as healthcare, chemistry, and biomedical research. Entity mapping is…

Medical Entity Recognition (MedER) is an essential NLP task for extracting meaningful entities from the medical corpus. Nowadays, MedER-based research outcomes can remarkably contribute to the development of automated systems in the medical…

计算与语言 · 计算机科学 2025-12-22 Tanjim Taharat Aurpa , Farzana Akter , Md. Mehedi Hasan , Shakil Ahmed , Shifat Ara Rafiq , Fatema Khan

Biomedical queries have become increasingly prevalent in web searches, reflecting the growing interest in accessing biomedical literature. Despite recent research on large-language models (LLMs) motivated by endeavours to attain generalized…

计算与语言 · 计算机科学 2024-08-06 Ankan Mullick , Mukur Gupta , Pawan Goyal