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As proteins with similar structures often have similar functions, analysis of protein structures can help predict protein functions and is thus important. We consider the problem of protein structure classification, which computationally…

机器学习 · 统计学 2019-10-08 Hongyu Guo , Khalique Newaz , Scott Emrich , Tijana Milenkovic , Jun Li

Spectral Graph Neural Networks (GNNs) with various graph filters have received extensive affirmation due to their promising performance in graph learning problems. However, it is known that GNNs do not always perform well. Although graph…

机器学习 · 计算机科学 2022-02-18 Zhixian Chen , Tengfei Ma , Yang Wang

Graph Neural Networks (GNNs) have emerged as the de facto standard for representation learning on graphs, owing to their ability to effectively integrate graph topology and node attributes. However, the inherent suboptimal nature of node…

机器学习 · 计算机科学 2023-12-27 Zhiyao Zhou , Sheng Zhou , Bochao Mao , Xuanyi Zhou , Jiawei Chen , Qiaoyu Tan , Daochen Zha , Yan Feng , Chun Chen , Can Wang

Spatial Message Passing Graph Neural Networks (MPGNNs) are widely used for learning on graph-structured data. However, key limitations of l-step MPGNNs are that their "receptive field" is typically limited to the l-hop neighborhood of a…

机器学习 · 计算机科学 2024-06-04 Simon Geisler , Arthur Kosmala , Daniel Herbst , Stephan Günnemann

Subgraph pattern detection aims to uncover complex interaction structures in graphs. However, state-of-the-art graph neural network (GNN)-based solutions assume centralized access to the entire graph. When graphs are instead distributed…

机器学习 · 计算机科学 2026-05-08 Selin Ceydeli , Rui Wang , Kubilay Atasu

Approximation-based spectral graph neural networks, which construct graph filters with function approximation, have shown substantial performance in graph learning tasks. Despite their great success, existing works primarily employ…

机器学习 · 计算机科学 2025-05-21 Guoming Li , Jian Yang , Shangsong Liang

Graph Neural Networks (GNNs) have received considerable attention since its introduction. It has been widely applied in various fields due to its ability to represent graph structured data. However, the application of GNNs is constrained by…

神经元与认知 · 定量生物学 2023-09-20 Yihan Wu , Tao Chang , Peng Xu , Yangsong Zhang

The mining and utilization of features directly affect the classification performance of models used in the classification and recognition of hyperspectral remote sensing images. Traditional models usually conduct feature mining from a…

计算机视觉与模式识别 · 计算机科学 2021-06-29 Yunsong Zhao , Yin Li , Zhihan Chen , Tianchong Qiu , Guojin Liu

Graph neural networks (GNNs) are designed to process data associated with graphs. They are finding an increasing range of applications; however, as with other modern machine learning techniques, their theoretical understanding is limited.…

无序系统与神经网络 · 物理学 2026-02-23 O. Duranthon , L. Zdeborová

Existing Graph Neural Networks (GNNs) are limited to process graphs each of whose vertices is represented by a vector or a single value, limited their representing capability to describe complex objects. In this paper, we propose the first…

机器学习 · 计算机科学 2024-07-02 Jiongshu Wang , Jing Yang , Jiankang Deng , Hatice Gunes , Siyang Song

In this paper, we propose MGNet, a simple and effective multiplex graph convolutional network (GCN) model for multimodal brain network analysis. The proposed method integrates tensor representation into the multiplex GCN model to extract…

计算机视觉与模式识别 · 计算机科学 2021-08-03 Zhaoming Kong , Lichao Sun , Hao Peng , Liang Zhan , Yong Chen , Lifang He

Real data collected from different applications that have additional topological structures and connection information are amenable to be represented as a weighted graph. Considering the node labeling problem, Graph Neural Networks (GNNs)…

社会与信息网络 · 计算机科学 2020-02-06 Xiaoxiao Li , Joao Saude

Spectral features are widely incorporated within Graph Neural Networks (GNNs) to improve their expressive power, or their ability to distinguish among non-isomorphic graphs. One popular example is the usage of graph Laplacian eigenvectors…

机器学习 · 计算机科学 2025-09-29 Snir Hordan , Maya Bechler-Speicher , Gur Lifshitz , Nadav Dym

Graph, as an important data representation, is ubiquitous in many real world applications ranging from social network analysis to biology. How to correctly and effectively learn and extract information from graph is essential for a large…

机器学习 · 计算机科学 2020-10-27 Xiaodong Jiang , Ronghang Zhu , Pengsheng Ji , Sheng Li

Graphs are fundamental data structures for modeling complex interactions in domains such as social networks, molecular structures, and biological systems. Graph-level tasks, which involve predicting properties or labels for entire graphs,…

机器学习 · 计算机科学 2026-04-10 Haoyang Li , Yuming Xu , Alexander Zhou , Yongqi Zhang , Jason Chen Zhang , Lei Chen , Qing Li

Intelligent fault diagnosis has been increasingly improved with the evolution of deep learning (DL) approaches. Recently, the emerging graph neural networks (GNNs) have also been introduced in the field of fault diagnosis with the goal to…

信号处理 · 电气工程与系统科学 2023-03-28 Tianfu Li , Chuang Sun , Olga Fink , Yuangui Yang , Xuefeng Chen , Ruqiang Yan

Graph signal processing (GSP) is a key tool for satisfying the growing demand for information processing over networks. However, the success of GSP in downstream learning and inference tasks is heavily dependent on the prior identification…

信号处理 · 电气工程与系统科学 2021-03-29 Seyed Saman Saboksayr , Gonzalo Mateos , Mujdat Cetin

Spectral Graph Convolutional Networks (GCNs) are a generalization of convolutional networks to learning on graph-structured data. Applications of spectral GCNs have been successful, but limited to a few problems where the graph is fixed,…

机器学习 · 计算机科学 2018-11-26 Boris Knyazev , Xiao Lin , Mohamed R. Amer , Graham W. Taylor

Graph embedding techniques have been increasingly deployed in a multitude of different applications that involve learning on non-Euclidean data. However, existing graph embedding models either fail to incorporate node attribute information…

机器学习 · 计算机科学 2021-06-22 Chenhui Deng , Zhiqiang Zhao , Yongyu Wang , Zhiru Zhang , Zhuo Feng

Graph Neural Networks (GNNs) are exemplary deep models designed for graph data. Message passing mechanism enables GNNs to effectively capture graph topology and push the performance boundaries across various graph tasks. However, the trend…

神经与进化计算 · 计算机科学 2025-09-29 Huizhe Zhang , Jintang Li , Yuchang Zhu , Liang Chen , Li Kuang