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相关论文: Cross-Modal Learning for Chemistry Property Predic…

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We explore different strategies to integrate prior domain knowledge into the design of a deep neural network (DNN). We focus on graph neural networks (GNN), with a use case of estimating the potential energy of chemical systems (molecules…

机器学习 · 计算机科学 2022-08-26 Jay Morgan , Adeline Paiement , Christian Klinke

Goal-oriented de novo molecule design, namely generating molecules with specific property or substructure constraints, is a crucial yet challenging task in drug discovery. Existing methods, such as Bayesian optimization and reinforcement…

计算工程、金融与科学 · 计算机科学 2025-02-28 Chuanliu Fan , Ziqiang Cao , Zicheng Ma , Nan Yu , Yimin Peng , Jun Zhang , Yiqin Gao , Guohong Fu

Property prediction plays an important role in material discovery. As an initial step to eventually develop a foundation model for material science, we introduce a new autoencoder called the MHG-GNN, which combines graph neural network…

Deep learning is an important method for molecular design and exhibits considerable ability to predict molecular properties, including physicochemical, bioactive, and ADME/T (absorption, distribution, metabolism, excretion, and toxicity)…

分子网络 · 定量生物学 2022-05-10 Hanxuan Cai , Huimin Zhang , Duancheng Zhao , Jingxing Wu , Ling Wang

Molecular property prediction (MPP) is a cornerstone of drug discovery and materials science, yet conventional deep learning approaches depend on large labeled datasets that are often unavailable. Few-shot Molecular property prediction…

机器学习 · 计算机科学 2025-10-27 Xiangyang Xu , Hongyang Gao

With the rapid growth of fintech, personalized financial product recommendations have become increasingly important. Traditional methods like collaborative filtering or content-based models often fail to capture users' latent preferences…

信息检索 · 计算机科学 2025-06-09 Yushang Zhao , Yike Peng , Dannier Li , Yuxin Yang , Chengrui Zhou , Jing Dong

In this study, we present a framework aimed at enhancing molecular property prediction through the integration of local descriptors obtained from large-scale pretrained machine learning potentials into three-dimensional graph neural…

化学物理 · 物理学 2026-02-04 Ryoichi Uchiyama , Yuya Nakajima , Yuta Tanaka , Junji Seino

Incorporating Machine Learning (ML) into material property prediction has become a crucial step in accelerating materials discovery. A key challenge is the severe lack of training data, as many properties are too complicated to calculate…

Molecular property prediction (e.g., energy) is an essential problem in chemistry and biology. Unfortunately, many supervised learning methods usually suffer from the problem of scarce labeled molecules in the chemical space, where such…

机器学习 · 计算机科学 2020-07-08 Zhongkai Hao , Chengqiang Lu , Zheyuan Hu , Hao Wang , Zhenya Huang , Qi Liu , Enhong Chen , Cheekong Lee

To accurately study chemical reactions in the condensed phase or within enzymes, both a quantum-mechanical description and sufficient configurational sampling is required to reach converged estimates. Here, quantum mechanics/molecular…

化学物理 · 物理学 2022-10-05 Albert Hofstetter , Lennard Böselt , Sereina Riniker

Zero-shot graph machine learning, especially with graph neural networks (GNNs), has garnered significant interest due to the challenge of scarce labeled data. While methods like self-supervised learning and graph prompt learning have been…

机器学习 · 计算机科学 2024-12-20 Duo Wang , Yuan Zuo , Fengzhi Li , Junjie Wu

Research into deep learning models for molecular property prediction has primarily focused on the development of better Graph Neural Network (GNN) architectures. Though new GNN variants continue to improve performance, their modifications…

定量方法 · 定量生物学 2021-11-23 Toni Sagayaraj , Carsten Eickhoff

In recent years, Large Language Models (LLMs) have achieved significant success in natural language processing (NLP) and various interdisciplinary areas. However, applying LLMs to chemistry is a complex task that requires specialized domain…

机器学习 · 计算机科学 2024-02-05 Chang Liao , Yemin Yu , Yu Mei , Ying Wei

Machine learning techniques paired with the availability of massive datasets dramatically enhance our ability to explore the chemical compound space by providing fast and accurate predictions of molecular properties. However, learning on…

How to produce expressive molecular representations is a fundamental challenge in AI-driven drug discovery. Graph neural network (GNN) has emerged as a powerful technique for modeling molecular data. However, previous supervised approaches…

机器学习 · 计算机科学 2020-12-22 Pengyong Li , Jun Wang , Yixuan Qiao , Hao Chen , Yihuan Yu , Xiaojun Yao , Peng Gao , Guotong Xie , Sen Song

Pre-trained Language Models (PLMs) have the potential to transform software development tasks. However, despite significant advances, current PLMs struggle to capture the structured and relational attributes of code, such as control flow…

软件工程 · 计算机科学 2026-05-06 Mert Tiftikci , Amir Molzam Sharifloo , Mira Mezini

Advancements in neural machinery have led to a wide range of algorithmic solutions for molecular property prediction. Two classes of models in particular have yielded promising results: neural networks applied to computed molecular…

Heterogeneous graph neural networks (HGNNs) excel at capturing structural and semantic information in heterogeneous graphs (HGs), while struggling to generalize across domains and tasks. With the rapid advancement of large language models…

社会与信息网络 · 计算机科学 2025-07-31 Jinyu Yang , Cheng Yang , Shanyuan Cui , Zeyuan Guo , Liangwei Yang , Muhan Zhang , Zhiqiang Zhang , Chuan Shi

Large language models (LLMs) have demonstrated rapid progress across a wide array of domains. Owing to the very large number of parameters and training data in LLMs, these models inherently encompass an expansive and comprehensive materials…

材料科学 · 物理学 2024-11-20 Siyu Liu , Tongqi Wen , A. S. L. Subrahmanyam Pattamatta , David J. Srolovitz