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Under high cylindrical confinement, segments of ring polymers can be localized along the long axis of the cylinder by introducing internal loops within the ring polymer. The emergent organization of the polymer segments occurs because of…

软凝聚态物质 · 物理学 2026-04-06 Sanjay Bhandarkar , Debarshi Mitra , Jürgen Horbach , Apratim Chatterji

Heteropolymers are ubiquitous in both synthetic systems, such as block copolymers, and biological macromolecules, including proteins and nucleic acids. Beyond their chemical composition, these polymers often exhibit spatial variations in…

软凝聚态物质 · 物理学 2025-04-02 Arvind Saini , Rajiblochan Sahoo , Rajarshi Chakrabarti , Sayantan Dutta

We study the motion of dispersed nanoprobes in entangled active-passive polymer mixtures. By comparing the two architectures of linear vs. unconcatenated and unknotted circular polymers, we demonstrate that novel, rich physics emerge. For…

软凝聚态物质 · 物理学 2021-08-27 Andrea Papale , Jan Smrek , Angelo Rosa

Polar polymer activity is a fundamental mechanism behind a large number of cellular dynamical processes. The number and location of the active sites on the polymer backbone play a central role in their dynamics and conformational…

软凝聚态物质 · 物理学 2025-03-25 Surabhi Jaiswal , Prithwiraj Maity , Snigdha Thakur , Marisol Ripoll

We show by means of continuum theory and simulations that geometric percolation in uniaxial nematics of hard slender particles is fundamentally different from that in isotropic dispersions. In the nematic, percolation depends only very…

软凝聚态物质 · 物理学 2019-03-07 Shari P. Finner , Tanja Schilling , Paul van der Schoot

Cytoskeletal active nematics exhibit striking non-equilibrium dynamics that are powered by energy-consuming molecular motors. To gain insight into the structure and mechanics of these materials, we design programmable clusters in which…

软凝聚态物质 · 物理学 2021-09-15 Alexandra M. Tayar , Michael F. Hagan , Zvonimir Dogic

We investigate the nonequilibrium dynamics of semiflexible polymers driven by motor proteins (MPs) in two-dimensional motility assays under harmonic confinement. Using a coarse-grained agent-based model that incorporates stochastic motor…

软凝聚态物质 · 物理学 2025-09-09 Sandip Roy , Abhishek Chaudhuri , Anil Kumar Dasanna

Polymers with active segments constitute prospective future materials and are used as a model for some biological systems such as chromatin. The directions of the active forces are typically introduced with temporal or spatial correlations…

软凝聚态物质 · 物理学 2024-11-25 Adam H. T. P. Höfler , Iurii Chubak , Christos N. Likos , Jan Smrek

Colloidal building blocks with re-configurable shapes and dynamic interactions can exhibit unusual self-assembly behaviors and pathways. In this work, we consider the phase behavior of colloids coated with surface-mobile polymer brushes…

软凝聚态物质 · 物理学 2024-05-16 Yaxin Xu , Prabhat Jandhyala , Sho C. Takatori

While the dynamics of polymer chains in equilibrium media is well understood by now, the polymer dynamics in active non-equilibrium environments can be very different. Here we study the dynamics of polymers in a viscous medium containing…

软凝聚态物质 · 物理学 2017-06-23 Jaeoh Shin , Andrey G. Cherstvy , Won Kyu Kim , Vasily Zaburdaev

Describing the kinetics of polymer reactions, such as the formation of loops and hairpins in nucleic acids or polypeptides, is complicated by the structural dynamics of their chains. Although both intramolecular reactions, such as…

化学物理 · 物理学 2012-09-10 Thomas Guérin , Olivier Bénichou , Raphaël Voituriez

How the geometry of nano-sized confinement affects dynamics of biomaterials is interesting yet poorly understood. An elucidation of structural details upon nano-sized confinement may benefit manufacturing pharmaceuticals in biomaterial…

生物物理 · 物理学 2015-05-13 Shao-Qing Zhang , Margaret S. Cheung

We investigate the mechanical properties of amorphous polymers by means of coarse-grained simulations and nonaffine lattice dynamics theory. A small increase of polymer chain bending stiffness leads first to softening of the material, while…

软凝聚态物质 · 物理学 2017-09-14 Christopher Ness , Vladimir V. Palyulin , Rico Milkus , Robert Elder , Timothy Sirk , Alessio Zaccone

Many biological fluids are composed of suspended polymers immersed in a viscous fluid. A prime example is mucus, where the polymers are also known to form a network. While the presence of this microstructure is linked with an overall…

流体动力学 · 物理学 2024-10-10 Adam K. Townsend , Eric E. Keaveny

Physically confining polymers into nanoscale pores induces significant changes in their dynamics. Although different results on the effect of confinement on the dynamics of polymers have been reported, changes in the segmental mobility of…

软凝聚态物质 · 物理学 2022-05-27 R. Bharath Venkatesh , Daeyeon Lee

Semiflexible polymers in concentrated lyotropic solution are studied within a bead-spring model by molecular dynamics simulations, focusing on the emergence of a smectic A phase and its properties. We systematically vary the density of the…

软凝聚态物质 · 物理学 2019-01-28 Andrey Milchev , Arash Nikoubashman , Kurt Binder

Recent theoretical works exploring the hydrodynamics of soft material in non-equilibrium situations are reviewed. We discuss the role of hydrodynamic interactions for three different systems: i) the deformation and orientation of…

软凝聚态物质 · 物理学 2012-03-08 Manoel Manghi , Xaver Schlagberger , Yong-Woon Kim , Roland R. Netz

Using agent-based simulations of self-propelled particles subject to short-range repulsion and nematic alignment we explore the dynamical phases of a dense active material confined to the surface of a sphere. We map the dynamical phase…

软凝聚态物质 · 物理学 2018-04-25 Silke Henkes , M. Cristina Marchetti , Rastko Sknepnek

Nematic systems are two component superconductors that break rotational symmetry, but exhibit a mixed symmetry that couples spatial rotations and phase difference rotations. We show that a consequence of this induced spatial anisotropy is…

超导电性 · 物理学 2023-06-14 Martin Speight , Thomas Winyard , Egor Babaev

The viscoelastic behavior of composites consisting of spindle-shaped hematite particles in poly-N-isopropylacrylamide hydrogels is investigated both, by means of rheological oscillatory shear experiments, and the field-induced alignment of…

软凝聚态物质 · 物理学 2017-04-20 Annemarie Nack , Julian Seifert , Christopher Passow , Joachim Wagner