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A major challenge in computational chemistry is the generation of novel molecular structures with desirable pharmacological and physiochemical properties. In this work, we investigate the potential use of autoencoder, a deep learning…

机器学习 · 计算机科学 2017-11-22 Thomas Blaschke , Marcus Olivecrona , Ola Engkvist , Jürgen Bajorath , Hongming Chen

Molecule generation is advancing rapidly in chemical discovery and drug design. Flow matching methods have recently set the state of the art (SOTA) in unconditional molecule generation, surpassing score-based diffusion models. However,…

We propose a novel randomized algorithm for constructing binary neural networks with tunable accuracy. This approach is motivated by hyperdimensional computing (HDC), which is a brain-inspired paradigm that leverages high-dimensional vector…

机器学习 · 计算机科学 2025-11-27 Alireza Aghasi , Nicholas Marshall , Saeid Pourmand , Wyatt Whiting

Generative AI (GenAI) has revolutionized data-driven modeling by enabling the synthesis of high-dimensional data across various applications, including image generation, language modeling, biomedical signal processing, and anomaly…

机器学习 · 计算机科学 2025-09-09 Yao Xie , Xiuyuan Cheng

Generative Flow Networks (GFlowNets), a new family of probabilistic samplers, have recently emerged as a promising framework for learning stochastic policies that generate high-quality and diverse objects proportionally to their rewards.…

机器学习 · 计算机科学 2024-06-05 Chunhui Li , Cheng-Hao Liu , Dianbo Liu , Qingpeng Cai , Ling Pan

Understanding how the brain encodes stimuli has been a fundamental problem in computational neuroscience. Insights into this problem have led to the design and development of artificial neural networks that learn representations by…

神经元与认知 · 定量生物学 2025-12-04 Shubham Choudhary , Paul Masset , Demba Ba

The de novo generation of drug-like molecules capable of inducing desirable phenotypic changes is receiving increasing attention. However, previous methods predominantly rely on expression profiles to guide molecule generation, but overlook…

生物大分子 · 定量生物学 2025-06-04 Hui Liu , Shiye Tian , Xuejun Liu

Machine learning methods have revolutionized the discovery process of new molecules and materials. However, the intensive training process of neural networks for molecules with ever-increasing complexity has resulted in exponential growth…

Efficiently retrieving an enormous chemical library to design targeted molecules is crucial for accelerating drug discovery, organic chemistry, and optoelectronic materials. Despite the emergence of generative models to produce novel…

计算工程、金融与科学 · 计算机科学 2024-09-13 Zijun Chen , Yu Wang , Liuzhenghao Lv , Hao Li , Zongying Lin , Li Yuan , Yonghong Tian

State-of-the-art semantic segmentation methods require sufficient labeled data to achieve good results and hardly work on unseen classes without fine-tuning. Few-shot segmentation is thus proposed to tackle this problem by learning a model…

计算机视觉与模式识别 · 计算机科学 2020-08-05 Zhuotao Tian , Hengshuang Zhao , Michelle Shu , Zhicheng Yang , Ruiyu Li , Jiaya Jia

Structure-based drug design (SBDD), aiming to generate 3D molecules with high binding affinity toward target proteins, is a vital approach in novel drug discovery. Although recent generative models have shown great potential, they suffer…

机器学习 · 计算机科学 2025-11-05 Jingyuan Zhou , Hao Qian , Shikui Tu , Lei Xu

Graph neural networks (GNNs) demonstrate great performance in compound property and activity prediction due to their capability to efficiently learn complex molecular graph structures. However, two main limitations persist including…

生物大分子 · 定量生物学 2023-10-10 Apakorn Kengkanna , Masahito Ohue

Fluorescence microscopy allows for a detailed inspection of cells, cellular networks, and anatomical landmarks by staining with a variety of carefully-selected markers visualized as color channels. Quantitative characterization of…

计算机视觉与模式识别 · 计算机科学 2021-08-26 Alvaro Gomariz , Tiziano Portenier , Patrick M. Helbling , Stephan Isringhausen , Ute Suessbier , César Nombela-Arrieta , Orcun Goksel

Effectively designing molecular geometries is essential to advancing pharmaceutical innovations, a domain, which has experienced great attention through the success of generative models and, in particular, diffusion models. However, current…

生物大分子 · 定量生物学 2025-01-07 Sirine Ayadi , Leon Hetzel , Johanna Sommer , Fabian Theis , Stephan Günnemann

The incredible capabilities of generative artificial intelligence models have inevitably led to their application in the domain of drug discovery. Within this domain, the vastness of chemical space motivates the development of more…

机器学习 · 计算机科学 2024-02-08 Gregory W. Kyro , Anton Morgunov , Rafael I. Brent , Victor S. Batista

Molecular dynamics (MD) has long been the de facto choice for simulating complex atomistic systems from first principles. Recently deep learning models become a popular way to accelerate MD. Notwithstanding, existing models depend on…

计算工程、金融与科学 · 计算机科学 2023-01-10 Fang Wu , Stan Z. Li

This paper studies Generative Flow Networks (GFlowNets), which learn to sample objects proportionally to a given reward function through the trajectory of state transitions. In this work, we observe that GFlowNets tend to under-exploit the…

机器学习 · 计算机科学 2024-10-30 Hyosoon Jang , Yunhui Jang , Minsu Kim , Jinkyoo Park , Sungsoo Ahn

Generation of drug-like molecules with high binding affinity to target proteins remains a difficult and resource-intensive task in drug discovery. Existing approaches primarily employ reinforcement learning, Markov sampling, or deep…

机器学习 · 计算机科学 2022-06-22 Peter Eckmann , Kunyang Sun , Bo Zhao , Mudong Feng , Michael K. Gilson , Rose Yu

This paper focuses on hyperspectral image (HSI) super-resolution that aims to fuse a low-spatial-resolution HSI and a high-spatial-resolution multispectral image to form a high-spatial-resolution HSI (HR-HSI). Existing deep learning-based…

图像与视频处理 · 电气工程与系统科学 2023-01-05 Jianjun Liu , Zebin Wu , Liang Xiao , Xiao-Jun Wu

Disentangled representations can be useful in many downstream tasks, help to make deep learning models more interpretable, and allow for control over features of synthetically generated images that can be useful in training other models…

计算机视觉与模式识别 · 计算机科学 2021-03-22 Aadhithya Sankar , Matthias Keicher , Rami Eisawy , Abhijeet Parida , Franz Pfister , Seong Tae Kim , Nassir Navab
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