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Recent developments in automated tracking allow uninterrupted, high-resolution recording of animal trajectories, sometimes coupled with the identification of stereotyped changes of body pose or other behaviors of interest. Analysis and…

种群与进化 · 定量生物学 2018-07-04 Katarina Bodova , Gabriel J. Mitchell , Roy Harpaz , Elad Schneidman , Gasper Tkacik

Individual computations and social interactions underlying collective behavior in groups of animals are of great ethological, behavioral, and theoretical interest. While complex individual behaviors have successfully been parsed into small…

神经元与认知 · 定量生物学 2022-06-08 Roy Harpaz , Gašper Tkačik , Elad Schneidman

State-switching models such as hidden Markov models or Markov-switching regression models are routinely applied to analyse sequences of observations that are driven by underlying non-observable states. Coupled state-switching models extend…

统计方法学 · 统计学 2020-05-01 Jennifer Pohle , Roland Langrock , Mihaela van der Schaar , Ruth King , Frants Havmand Jensen

Collective motion is one of the most ubiquitous behaviours displayed by social organisms and has led to the development of numerous models. Recent advances in the understanding of sensory system and information processing by animals impel…

生物物理 · 物理学 2016-01-28 Bertrand Collignon , Axel Séguret , José Halloy

Group dynamic movement is a fundamental aspect of many species' movements. The need to adequately model individuals' interactions with other group members has been recognised, particularly in order to differentiate the role of social forces…

Continuous-time models have been developed to capture features of animal movement across temporal scales. In particular, one popular model is the continuous-time correlated random walk, in which the velocity of an animal is formulated as an…

定量方法 · 定量生物学 2018-08-07 Théo Michelot , Paul G. Blackwell

Animals chain movements into long-lived motor strategies, exhibiting variability across scales that reflects the interplay between internal states and environmental cues. To reveal structure in such variability, we build Markov models of…

The focus of this work is on developing probabilistic models for user activity in social networks by incorporating the social network influence as perceived by the user. For this, we propose a coupled Hidden Markov Model, where each user's…

物理与社会 · 物理学 2013-05-10 Vasanthan Raghavan , Greg Ver Steeg , Aram Galstyan , Alexander G. Tartakovsky

Motivated by applications in movement ecology, in this paper I propose a new class of integrated continuous-time hidden Markov models in which each observation depends on the underlying state of the process over the whole interval since the…

统计方法学 · 统计学 2019-10-01 Paul G Blackwell

To investigate interactions between parasite species in a host, a population of field voles was studied longitudinally, with presence or absence of six different parasites measured repeatedly. Although trapping sessions were regular, a…

应用统计 · 统计学 2013-01-29 Chris Sherlock , Tatiana Xifara , Sandra Telfer , Mike Begon

Animals living in groups make movement decisions that depend, among other factors, on social interactions with other group members. Our present understanding of social rules in animal collectives is mainly based on empirical fits to…

定量方法 · 定量生物学 2011-11-22 Alfonso Pérez-Escudero , Gonzalo G. de Polavieja

In this work, we propose a model that can be used to infer the behavior of multiple animals. Our proposal is defined as a set of hidden Markov models that are based on the sticky hierarchical Dirichlet process, with a shared base-measure,…

应用统计 · 统计学 2021-11-12 Gianluca Mastrantonio

Better understanding the natural world is a crucial task with a wide range of applications. In environments with close proximity between humans and animals, such as zoos, it is essential to better understand the causes behind animal…

Adaptively forecasting human behavior in social settings is an important step toward achieving Artificial General Intelligence. Most existing research in social forecasting has focused either on unfocused interactions, such as pedestrian…

机器学习 · 计算机科学 2025-01-06 Augustinas Jučas , Chirag Raman

We investigate to what extent the interaction dynamics of a population of wild house mouse (Mus musculus domesticus) in their environment can be explained by a simple stochastic model. We use a Markov chain model to describe the transitions…

定量方法 · 定量生物学 2012-12-05 Nicolas Perony , Barbara König , Frank Schweitzer

Hidden Markov Models with an underlying Mixture of Gaussian structure have proven effective in learning Human-Robot Interactions from demonstrations for various interactive tasks via Gaussian Mixture Regression. However, a mismatch occurs…

Collective behaviour in living systems is observed across many scales, from bacteria to insects, to fish shoals. Zebrafish have emerged as a model system amenable to laboratory study. Here we report a three-dimensional study of the…

统计力学 · 物理学 2024-05-16 Yushi Yang , Francesco Turci , Erika Kague , Chrissy L. Hammond , John Russo , C. Patrick Royall

Collective movements are pervasive behaviours among social organisms and have led to the development of many models. However, modelling animal trajectories and social interactions in simple bounded environments remains a challenge.…

神经元与认知 · 定量生物学 2018-11-28 Leo Cazenille , Nicolas Bredeche , José Halloy

In open water, social fish gather to form schools, in which fish generally align with each other. In this work, we study how this social behavior evolves when perturbed by artificial obstacles. We measure the collective behavior of a group…

Hidden Markov models (HMMs) are commonly used to model animal movement data and infer aspects of animal behavior. An HMM assumes that each data point from a time series of observations stems from one of $N$ possible states. The states are…

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