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The traditional algorithms do not meet the latest multiple requirements simultaneously for objects. Density-based method is one of the methodologies, which can detect arbitrary shaped clusters where clusters are defined as dense regions…

数据库 · 计算机科学 2016-12-05 Singh Vijendra , Priyanka Trikha

This paper describes the incremental behaviours of Density based clustering. It specially focuses on the Density Based Spatial Clustering of Applications with Noise (DBSCAN) algorithm and its incremental approach.DBSCAN relies on a density…

数据库 · 计算机科学 2014-06-19 Sanjay Chakraborty , N. K. Nagwani

Density-based spatial clustering of applications with noise (DBSCAN) is a data clustering algorithm which has the high-performance rate for dataset where clusters have the constant density of data points. One of the significant attributes…

DBSCAN and OPTICS are powerful algorithms for identifying clusters of points in domains where few assumptions can be made about the structure of the data. In this paper, we leverage these strengths and introduce a new algorithm, LINSCAN,…

机器学习 · 计算机科学 2026-04-15 Andrew Dennehy , Xiaoyu Zou , Shabnam J. Semnani , Yuri Fialko , Alexander Cloninger

Density-based clustering techniques are used in a wide range of data mining applications. One of their most attractive features con- sists in not making use of prior knowledge of the number of clusters that a dataset contains along with…

机器学习 · 计算机科学 2018-07-24 Roberto Pirrone , Vincenzo Cannella , Sergio Monteleone , Gabriella Giordano

The cornerstone of computational drug design is the calculation of binding affinity between two biological counterparts, especially a chemical compound, i.e., a ligand, and a protein. Predicting the strength of protein-ligand binding with…

生物大分子 · 定量生物学 2019-12-04 Yanjun Li , Mohammad A. Rezaei , Chenglong Li , Xiaolin Li , Dapeng Wu

We introduce a deep learning architecture for structure-based virtual screening that generates fixed-sized fingerprints of proteins and small molecules by applying learnable atom convolution and softmax operations to each compound…

The Density Based Spatial Clustering of Applications with Noise (DBSCAN) is a topometric algorithm used to cluster spatial data that are affected by background noise. For the first time, we propose the use of this method for the detection…

天体物理仪器与方法 · 物理学 2015-06-11 A. Tramacere , C. Vecchio

The density based clustering method {\em Density-Based Spatial Clustering of Applications with Noise (DBSCAN)} is a popular method for outlier recognition and has received tremendous attention from many different areas. A major issue of the…

计算几何 · 计算机科学 2020-02-28 Hu Ding , Fan Yang

The spatial and dynamical structure of star-forming regions can help provide insights on stellar formation patterns. The amount of data from current and upcoming surveys calls for robust and objective procedures to detect structure, so the…

DBSCAN is a fundamental spatial clustering algorithm with numerous practical applications. However, a bottleneck of the algorithm is in the worst case, the run time complexity is $O(n^2)$. To address this limitation, we propose a new…

数据库 · 计算机科学 2022-11-08 Xiaogang Huang , Tiefeng Ma , Conan Liu , Shuangzhe Liu

DBSCAN is a well-known density-based clustering algorithm to discover arbitrary shape clusters. While conceptually simple in serial, the algorithm is challenging to efficiently parallelize on manycore GPU architectures. Common pitfalls,…

分布式、并行与集群计算 · 计算机科学 2023-06-30 Andrey Prokopenko , Damien Lebrun-Grandie , Daniel Arndt

Density-based clustering has found numerous applications across various domains. The Density-Based Spatial Clustering of Applications with Noise (DBSCAN) algorithm is capable of finding clusters of varied shapes that are not linearly…

数据库 · 计算机科学 2019-12-03 Vinayak Mathur , Jinesh Mehta , Sanjay Singh

A novel combination of two widely-used clustering algorithms is proposed here for the detection and reduction of high data density regions. The Density Based Spatial Clustering of Applications with Noise (DBSCAN) algorithm is used for the…

计算物理 · 物理学 2023-07-19 Bart J. J. Kremers , Aaron Ho , Jonathan Citrin , Karel L. van de Plassche

The knowledge of potentially druggable binding sites on proteins is an important preliminary step towards the discovery of novel drugs. The computational prediction of such areas can be boosted by following the recent major advances in the…

生物大分子 · 定量生物学 2021-02-17 Stelios K. Mylonas , Apostolos Axenopoulos , Petros Daras

Accurately modeling and designing protein complex structures is a central problem in computational structural biology, with broad implications for understanding cellular function and developing therapeutics. This thesis investigates two…

机器学习 · 计算机科学 2026-05-13 Ziwei Xie

In this study, we propose an analytic statistical mechanics approach to solve a fundamental problem in biological physics called protein design. Protein design is an inverse problem of protein structure prediction, and its solution is the…

统计力学 · 物理学 2022-10-26 Tomoei Takahashi , George Chikenji , Kei Tokita

Many scientific problems involve data that is embedded in a space with periodic boundary conditions. This can for instance be related to an inherent cyclic or rotational symmetry in the data or a spatially extended periodicity. When…

机器学习 · 计算机科学 2025-10-08 Xander M. de Wit , Alessandro Gabbana

SUMMARY Geophysical imaging using the inversion procedure is a powerful tool for the exploration of the Earth's subsurface. However, the interpretation of inverted images can sometimes be difficult, due to the inherent limitations of…

We present sDBSCAN, a scalable density-based clustering algorithm in high dimensions with cosine distance. Utilizing the neighborhood-preserving property of random projections, sDBSCAN can quickly identify core points and their…

机器学习 · 计算机科学 2025-05-20 Haochuan Xu , Ninh Pham
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