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The goal of structure-based drug discovery is to find small molecules that bind to a given target protein. Deep learning has been used to generate drug-like molecules with certain cheminformatic properties, but has not yet been applied to…

定量方法 · 定量生物学 2022-01-27 Matthew Ragoza , Tomohide Masuda , David Ryan Koes

Modern generative models achieve excellent quality in a variety of tasks including image or text generation and chemical molecule modeling. However, existing methods often lack the essential ability to generate examples with requested…

Learning representations of molecular structures using deep learning is a fundamental problem in molecular property prediction tasks. Molecules inherently exist in the real world as three-dimensional structures; furthermore, they are not…

机器学习 · 计算机科学 2024-01-22 Daiki Koge , Naoaki Ono , Shigehiko Kanaya

Generating novel drug molecules with desired biological properties is a time consuming and complex task. Conditional generative adversarial models have recently been proposed as promising approaches for de novo drug design. In this paper,…

定量方法 · 定量生物学 2021-10-26 Yuansan Liu , James Bailey

One of the major applications of generative models for drug Discovery targets the lead-optimization phase. During the optimization of a lead series, it is common to have scaffold constraints imposed on the structure of the molecules…

定量方法 · 定量生物学 2021-01-05 Maxime Langevin , Herve Minoux , Maximilien Levesque , Marc Bianciotto

We seek to automate the design of molecules based on specific chemical properties. Our primary contributions are a simpler method for generating SMILES strings guaranteed to be chemically valid, using a combination of a new context-free…

机器学习 · 计算机科学 2018-11-29 Egor Kraev

Molecular property regression struggles with cases in chemically relevant target ranges that are underrepresented in datasets. Standard average error minimization approaches underperform in these highly relevant cases, and oversampling…

机器学习 · 计算机科学 2026-05-22 Brenda Nogueira , Gisela A. Gonzalez-Montiel , Meng Jiang , Nitesh V. Chawla , Nuno Moniz

The quest for accurate prediction of drug molecule properties poses a fundamental challenge in the realm of Artificial Intelligence Drug Discovery (AIDD). An effective representation of drug molecules emerges as a pivotal component in this…

机器学习 · 计算机科学 2024-04-22 Zhuoyuan Wang , Jiacong Mi , Shan Lu , Jieyue He

Developing new molecular compounds is crucial to address pressing challenges, from health to environmental sustainability. However, exploring the molecular space to discover new molecules is difficult due to the vastness of the space. Here…

机器学习 · 计算机科学 2025-05-23 Manuel Ruiz-Botella , Marta Sales-Pardo , Roger Guimerà

Deep generative neural networks have proven effective at both conditional and unconditional modeling of complex data distributions. Conditional generation enables interactive control, but creating new controls often requires expensive…

机器学习 · 计算机科学 2017-12-25 Jesse Engel , Matthew Hoffman , Adam Roberts

Autoregressive conditional image generation algorithms are capable of generating photorealistic images that are consistent with given textual or image conditions, and have great potential for a wide range of applications. Nevertheless, the…

计算机视觉与模式识别 · 计算机科学 2024-12-19 Qiaoying Qu , Shiyu Shen

The recent success of large foundation models in artificial intelligence has prompted the emergence of chemical pre-trained models. Despite the growing interest in large molecular pre-trained models that provide informative representations…

机器学习 · 计算机科学 2025-05-26 Jinho Chang , Jong Chul Ye

For a very long time, computational approaches to the design of new materials have relied on an iterative process of finding a candidate material and modeling its properties. AI has played a crucial role in this regard, helping to…

Deep generative models for graph-structured data offer a new angle on the problem of chemical synthesis: by optimizing differentiable models that directly generate molecular graphs, it is possible to side-step expensive search procedures in…

机器学习 · 统计学 2022-09-28 Nicola De Cao , Thomas Kipf

Scene Graph Generation (SGG) aims to explore the relationships between objects in images and obtain scene summary graphs, thereby better serving downstream tasks. However, the long-tailed problem has adversely affected the scene graph's…

计算机视觉与模式识别 · 计算机科学 2024-07-30 Yansheng Li , Tingzhu Wang , Kang Wu , Linlin Wang , Xin Guo , Wenbin Wang

The generation of molecules with desired properties has become increasingly popular, revolutionizing the way scientists design molecular structures and providing valuable support for chemical and drug design. However, despite the potential…

机器学习 · 计算机科学 2024-03-05 Yin Fang , Ningyu Zhang , Zhuo Chen , Lingbing Guo , Xiaohui Fan , Huajun Chen

In most scenarios, conditional image generation can be thought of as an inversion of the image understanding process. Since generic image understanding involves solving multiple tasks, it is natural to aim at generating images via…

计算机视觉与模式识别 · 计算机科学 2022-07-15 Ritika Chakraborty , Nikola Popovic , Danda Pani Paudel , Thomas Probst , Luc Van Gool

Graph generation techniques are increasingly being adopted for drug discovery. Previous graph generation approaches have utilized relatively small molecular building blocks such as atoms or simple cycles, limiting their effectiveness to…

机器学习 · 计算机科学 2020-04-21 Wengong Jin , Regina Barzilay , Tommi Jaakkola

We present Generative Semantic Segmentation (GSS), a generative learning approach for semantic segmentation. Uniquely, we cast semantic segmentation as an image-conditioned mask generation problem. This is achieved by replacing the…

计算机视觉与模式识别 · 计算机科学 2023-08-11 Jiaqi Chen , Jiachen Lu , Xiatian Zhu , Li Zhang

In the past decade, Artificial Intelligence driven drug design and discovery has been a hot research topic, where an important branch is molecule generation by generative models, from GAN-based models and VAE-based models to the latest…

生物大分子 · 定量生物学 2023-10-10 Siyuan Guo , Jihong Guan , Shuigeng Zhou