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Network embedding is a fervid topic in current networks science and observes that most real complex systems can be embedded in hidden metrics space and emerge as the geometrical property, where the geometric distance between nodes…

物理与社会 · 物理学 2020-04-28 Zongning Wu , Zengru Di , Ying Fan

Bayesian inference for phylogenetics is a gold standard for computing distributions of phylogenies. It faces the challenging problem of. moving throughout the high-dimensional space of trees. However, hyperbolic space offers a low…

种群与进化 · 定量生物学 2023-07-19 Matthew Macaulay , Aaron E. Darling , Mathieu Fourment

We introduce Mercator, a reliable embedding method to map real complex networks into their hyperbolic latent geometry. The method assumes that the structure of networks is well described by the Popularity$\times$Similarity…

物理与社会 · 物理学 2019-04-25 Guillermo García-Pérez , Antoine Allard , M. Ángeles Serrano , Marián Boguñá

We develop a geometric framework to study the structure and function of complex networks. We assume that hyperbolic geometry underlies these networks, and we show that with this assumption, heterogeneous degree distributions and strong…

统计力学 · 物理学 2010-09-14 Dmitri Krioukov , Fragkiskos Papadopoulos , Maksim Kitsak , Amin Vahdat , Marian Boguna

Posterior sampling is a task of central importance in Bayesian inference. For many applications in Bayesian meta-analysis and Bayesian transfer learning, the prior distribution is unknown and needs to be estimated from samples. In practice,…

统计计算 · 统计学 2024-08-06 Chenyang Zhong , Shouxuan Ji , Tian Zheng

Several observations indicate the existence of a latent hyperbolic space behind real networks that makes their structure very intuitive in the sense that the probability for a connection is decreasing with the hyperbolic distance between…

社会与信息网络 · 计算机科学 2021-05-21 Bianka Kovács , Gergely Palla

Embedding a network in hyperbolic space can reveal interesting features for the network structure, especially in terms of self-similar characteristics. The hidden metric space, which can be thought of as the underlying structure of the…

Finding the optimal embedding of networks into low-dimensional hyperbolic spaces is a challenge that received considerable interest in recent years, with several different approaches proposed in the literature. In general, these methods…

物理与社会 · 物理学 2024-01-08 Bendegúz Sulyok , Gergely Palla

The arrangement of network nodes in hyperbolic spaces has become a widely studied problem, motivated by numerous results suggesting the existence of hidden metric spaces behind the structure of complex networks. Although several methods…

物理与社会 · 物理学 2023-02-06 Bianka Kovács , Gergely Palla

A popular approach to semi-supervised learning proceeds by endowing the input data with a graph structure in order to extract geometric information and incorporate it into a Bayesian framework. We introduce new theory that gives appropriate…

机器学习 · 统计学 2020-01-14 Nicolas Garcia Trillos , Zachary Kaplan , Thabo Samakhoana , Daniel Sanz-Alonso

The embedding of complex networks into metric spaces has become a research topic of high interest with a wide variety of proposed methods. Low dimensional hyperbolic spaces offer a natural co-domain for embeddings allowing a roughly uniform…

物理与社会 · 物理学 2024-10-07 Sámuel G. Balogh , Bendegúz Sulyok , Tamás Vicsek , Gergely Palla

Bayesian inference in deep neural networks is challenging due to the high-dimensional, strongly multi-modal parameter posterior density landscape. Markov chain Monte Carlo approaches asymptotically recover the true posterior but are…

This paper introduces a Bayesian framework that combines Markov chain Monte Carlo (MCMC) sampling, dimensionality reduction, and neural density estimation to efficiently handle inverse problems that (i) must be solved multiple times, and…

计算工程、金融与科学 · 计算机科学 2026-02-24 Giacomo Bottacini , Matteo Torzoni , Andrea Manzoni

Recent research on network embedding in hyperbolic space have proven successful in several applications. However, nodes in real world networks tend to interact through several distinct channels. Simple aggregation or ignorance of this…

社会与信息网络 · 计算机科学 2021-11-02 Peiyuan Sun

The R package BiDAG implements Markov chain Monte Carlo (MCMC) methods for structure learning and sampling of Bayesian networks. The package includes tools to search for a maximum a posteriori (MAP) graph and to sample graphs from the…

统计计算 · 统计学 2021-05-04 Polina Suter , Jack Kuipers , Giusi Moffa , Niko Beerenwinkel

Learning low-dimensional numerical representations from symbolic data, e.g., embedding the nodes of a graph into a geometric space, is an important concept in machine learning. While embedding into Euclidean space is common, recent…

机器学习 · 计算机科学 2024-10-10 Thomas Bläsius , Jean-Pierre von der Heydt , Maximilian Katzmann , Nikolai Maas

Acyclic digraphs are the underlying representation of Bayesian networks, a widely used class of probabilistic graphical models. Learning the underlying graph from data is a way of gaining insights about the structural properties of a…

机器学习 · 统计学 2022-05-06 Jack Kuipers , Giusi Moffa

Hyperbolic spaces have recently gained momentum in the context of machine learning due to their high capacity and tree-likeliness properties. However, the representational power of hyperbolic geometry is not yet on par with Euclidean…

机器学习 · 计算机科学 2018-06-29 Octavian-Eugen Ganea , Gary Bécigneul , Thomas Hofmann

Hyperbolic geometry has emerged as an effective latent space for representing complex networks, owing to its ability to capture hierarchical organization and heterogeneous connectivity patterns using low-dimensional embeddings. As a result,…

机器学习 · 计算机科学 2026-05-01 Sofía Pérez Casulo , Marcelo Fiori , Bernardo Marenco , Federico Larroca

We introduce hyperbolic attention networks to endow neural networks with enough capacity to match the complexity of data with hierarchical and power-law structure. A few recent approaches have successfully demonstrated the benefits of…

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