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Motivation: Ab initio protein docking represents a major challenge for optimizing a noisy and costly "black box"-like function in a high-dimensional space. Despite progress in this field, there is no docking method available for rigorous…

生物大分子 · 定量生物学 2019-02-04 Yue Cao , Yang Shen

This paper presents a deep learning strategy to simultaneously solve Partial Differential Equations (PDEs) and back-calculate their parameters in the context of deep tunnel excavation. A Physics-Informed Neural Network (PINN) model is…

计算物理 · 物理学 2026-05-29 Alec Tristani , Chloé Arson

As key elements within the central dogma, DNA, RNA, and proteins play crucial roles in maintaining life by guaranteeing accurate genetic expression and implementation. Although research on these molecules has profoundly impacted fields like…

Credit scoring models, which are among the most potent risk management tools that banks and financial institutes rely on, have been a popular subject for research in the past few decades. Accordingly, many approaches have been developed to…

机器学习 · 计算机科学 2021-08-19 Mahsan Abdoli , Mohammad Akbari , Jamal Shahrabi

Nonlinear physical phenomena often show complex multiscale interactions; motivated by the principles of multiscale modeling in scientific computing, we propose PAS-Net, a physics-informed Adaptive-Scale Deep Operator Network for learning…

计算物理 · 物理学 2025-11-20 Changhong Mou , Yeyu Zhang , Xuewen Zhu , Qiao Zhuang

Clinical cystoscopy, the current standard for bladder cancer diagnosis, suffers from significant reliance on physician expertise, leading to variability and subjectivity in diagnostic outcomes. There is an urgent need for objective,…

图像与视频处理 · 电气工程与系统科学 2025-08-22 Jinliang Yu , Mingduo Xie , Yue Wang , Tianfan Fu , Xianglai Xu , Jiajun Wang

Applying deep learning concepts from image detection and graph theory has greatly advanced protein-ligand binding affinity prediction, a challenge with enormous ramifications for both drug discovery and protein engineering. We build upon…

生物大分子 · 定量生物学 2023-12-05 Gregory W. Kyro , Rafael I. Brent , Victor S. Batista

Bound-to-Bound Data Collaboration (B2BDC) provides a natural framework for addressing both forward and inverse uncertainty quantification problems. In this approach, QOI (quantity of interest) models are constrained by related experimental…

最优化与控制 · 数学 2019-04-02 Arun Hegde , Wenyu Li , James Oreluk , Andrew Packard , Michael Frenklach

Protein inverse folding aims to design an amino acid sequence that will fold into a given backbone structure, serving as a central task in protein design. Two main paradigms have been widely explored. Template-based methods exploit…

机器学习 · 计算机科学 2026-03-17 Yiran Zhu , Changxi Chi , Hongxin Xiang , Wenjie Du , Xiaoqi Wang , Jun Xia

Motivation: Prediction of ligands for proteins of known 3D structure is important to understand structure-function relationship, predict molecular function, or design new drugs. Results: We explore a new approach for ligand prediction in…

机器学习 · 统计学 2009-07-10 Brice Hoffmann , Mikhail Zaslavskiy , Jean-Philippe Vert , Véronique Stoven

Intrinsically disordered regions (IDRs) play central roles in cellular function, yet remain poorly evaluated by existing protein structure prediction benchmarks. Current evaluations largely focus on well-folded domains, overlooking three…

生物大分子 · 定量生物学 2026-02-11 Xinyue Zeng , Tuo Wang , Adithya Kulkarni , Alexander Lu , Alexandra Ni , Phoebe Xing , Junhan Zhao , Siwei Chen , Dawei Zhou

Scientific practice typically involves repeatedly studying a system, each time trying to unravel a different perspective. In each study, the scientist may take measurements under different experimental conditions (interventions,…

机器学习 · 统计学 2014-03-11 Sofia Triantafillou , Ioannis Tsamardinos

Protein-ligand modeling underpins computational drug discovery and molecular design. Existing protein-ligand benchmarks typically evaluate whether a protein and ligand interact and how strongly they bind, through tasks such as binary…

机器学习 · 计算机科学 2026-05-26 Zhaohan Meng , Zhen Bai , Ke Yuan , Iadh Ounis , Zaiqiao Meng , Hao Xu , Joseph Loscalzo

Infrared-visible (IR-VIS) feature matching plays an essential role in cross-modality visual localization, navigation and perception. Along with the rapid development of deep learning techniques, a number of representative image matching…

计算机视觉与模式识别 · 计算机科学 2026-03-16 Liangzheng Sun , Mengfan He , Xingyu Shao , Binbin Li , Zhiqiang Yan , Chunyu Li , Ziyang Meng , Fei Xing

Laser-induced breakdown spectroscopy is a preferred technique for fast and direct multi-elemental mapping of samples under ambient pressure, without any limitation on the targeted element. However, LIBS mapping data have two peculiarities:…

应用物理 · 物理学 2022-10-11 Riccardo Finotello , Mohamed Tamaazousti , Jean-Baptiste Sirven

Deep learning-based 3D human pose estimation performs best when trained on large amounts of labeled data, making combined learning from many datasets an important research direction. One obstacle to this endeavor are the different skeleton…

计算机视觉与模式识别 · 计算机科学 2023-01-02 István Sárándi , Alexander Hermans , Bastian Leibe

Accurately predicting molecular properties is a challenging but essential task in drug discovery. Recently, many mono-modal deep learning methods have been successfully applied to molecular property prediction. However, the inherent…

机器学习 · 计算机科学 2024-09-16 Xiaohua Lu , Liangxu Xie , Lei Xu , Rongzhi Mao , Shan Chang , Xiaojun Xu

Retrieving or generating two-dimensional molecular structures on the basis of vibrational spectra has been well demonstrated via deep learning models. However, deciphering three-dimensional molecular conformations is still challenging,…

化学物理 · 物理学 2026-04-28 Xin-Yu Lu , De-Yi Lin , Tong Zhu , Bin Ren , Hao Ma , Guo-Kun Liu

Approximately 1.2% of the world's population has impaired voice production. As a result, automatic dysphonic voice detection has attracted considerable academic and clinical interest. However, existing methods for automated voice assessment…

声音 · 计算机科学 2023-01-27 Jianwei Zhang , Julie Liss , Suren Jayasuriya , Visar Berisha

Accurate interpolation of seismic data is crucial for improving the quality of imaging and interpretation. In recent years, deep learning models such as U-Net and generative adversarial networks have been widely applied to seismic data…