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Visual analysis of complex fish habitats is an important step towards sustainable fisheries for human consumption and environmental protection. Deep Learning methods have shown great promise for scene analysis when trained on large-scale…

计算机视觉与模式识别 · 计算机科学 2020-08-31 Alzayat Saleh , Issam H. Laradji , Dmitry A. Konovalov , Michael Bradley , David Vazquez , Marcus Sheaves

Automated fish documentation processes are in the near future expected to play an essential role in sustainable fisheries management and for addressing challenges of overfishing. In this paper, we present a novel and publicly available…

计算机视觉与模式识别 · 计算机科学 2025-01-08 Stefan Hein Bengtson , Daniel Lehotský , Vasiliki Ismiroglou , Niels Madsen , Thomas B. Moeslund , Malte Pedersen

Phytoplankton are a crucial component of aquatic ecosystems, and effective monitoring of them can provide valuable insights into ocean environments and ecosystem changes. Traditional phytoplankton monitoring methods are often complex and…

计算机视觉与模式识别 · 计算机科学 2025-01-07 Yang Yu , Yuezun Li , Xin Sun , Junyu Dong

In the field of image-based drug discovery, capturing the phenotypic response of cells to various drug treatments and perturbations is a crucial step. However, existing methods require computationally extensive and complex multi-step…

Digital pathology has seen the advent of a wealth of foundational models (FM), yet to date their performance on cell phenotyping has not been benchmarked in a unified manner. We therefore propose PhenoBench: A comprehensive benchmark for…

Accurate fish detection in underwater imagery is essential for ecological monitoring, aquaculture automation, and robotic perception. However, practical deployment remains limited by fragmented datasets, heterogeneous imaging conditions,…

计算机视觉与模式识别 · 计算机科学 2025-07-25 Muayad Abujabal , Lyes Saad Saoud , Irfan Hussain

Early diagnosis of plant diseases is critical for global food safety, yet most AI solutions lack the generalization required for real-world agricultural diversity. These models are typically constrained to specific species, failing to…

计算机视觉与模式识别 · 计算机科学 2025-08-26 Saif Ur Rehman Khan , Muhammad Nabeel Asim , Sebastian Vollmer , Andreas Dengel

Phenotype segmentation is pivotal in analysing visual features of living organisms, enhancing our understanding of their characteristics. In the context of oysters, meat quality assessment is paramount, focusing on shell, meat, gonad, and…

计算机视觉与模式识别 · 计算机科学 2025-01-22 Wenli Yang , Yanyu Chen , Andrew Trotter , Byeong Kang

Phenotyping is fundamental to rare disease diagnosis, but manual curation of structured phenotypes from clinical notes is labor-intensive and difficult to scale. Existing artificial intelligence approaches typically optimize individual…

The future of the agriculture industry is intertwined with automation. Accurate fruit detection, yield estimation, and harvest time estimation are crucial for optimizing agricultural practices. These tasks can be carried out by robots to…

计算机视觉与模式识别 · 计算机科学 2024-11-05 Parham Jafary , Anna Bazangeya , Michelle Pham , Lesley G. Campbell , Sajad Saeedi , Kourosh Zareinia , Habiba Bougherara

Identifying phenotypes plays an important role in furthering our understanding of disease biology through practical applications within healthcare and the life sciences. The challenge of dealing with the complexities and noise within…

应用统计 · 统计学 2023-04-28 Andre Vauvelle , Hamish Tomlinson , Aaron Sim , Spiros Denaxas

The linking genotype to phenotype is the fundamental aim of modern genetics. We focus on study of links between gene expression data and phenotype data through integrative analysis. We propose three approaches. 1) The inherent complexity of…

定量方法 · 定量生物学 2015-06-30 Min Xu

This paper presents the AquaMonitor dataset, the first large computer vision dataset of aquatic invertebrates collected during routine environmental monitoring. While several large species identification datasets exist, they are rarely…

计算机视觉与模式识别 · 计算机科学 2025-05-29 Mikko Impiö , Philipp M. Rehsen , Tiina Laamanen , Arne J. Beermann , Florian Leese , Jenni Raitoharju

Multimodal large language models (MLLMs) have demonstrated impressive cross-domain capabilities, yet their proficiency in specialized scientific fields like marine biology remains underexplored. In this work, we systematically evaluate…

Coral reefs are rapidly declining under anthropogenic pressures (e.g., climate change), creating an urgent need for scalable and automated monitoring. Progress in data-driven coral analysis, however, is constrained by the scarcity of…

Accurate fetal growth assessment from ultrasound (US) relies on precise biometry measured by manually identifying anatomical landmarks in standard planes. Manual landmarking is time-consuming, operator-dependent, and sensitive to…

The development of foundation vision models has pushed the general visual recognition to a high level, but cannot well address the fine-grained recognition in specialized domain such as invasive species classification. Identifying and…

计算机视觉与模式识别 · 计算机科学 2023-10-31 Wei He , Kai Han , Ying Nie , Chengcheng Wang , Yunhe Wang

Cell heterogeneity and the inherent complexity due to the interplay of multiple molecular processes within the cell pose difficult challenges for current single-cell biology. We introduce an approach that identifies a disease phenotype from…

Accurate sex identification in fish is vital for optimizing breeding and management strategies in aquaculture, particularly for species at the risk of extinction. However, most existing methods are invasive or stressful and may cause…

计算机视觉与模式识别 · 计算机科学 2026-02-24 Zheng Miao , Tien-Chieh Hung

Traditional marine biological image recognition faces challenges of incomplete datasets and unsatisfactory model accuracy, particularly for few-shot conditions of rare species where data scarcity significantly hampers the performance. To…

计算机视觉与模式识别 · 计算机科学 2025-09-30 Chenghan Yang , Peng Zhou , Dong-Sheng Zhang , Yueyun Wang , Hong-Bin Shen , Xiaoyong Pan
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