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This paper presents an overview of the tenth edition of the BioASQ challenge in the context of the Conference and Labs of the Evaluation Forum (CLEF) 2022. BioASQ is an ongoing series of challenges that promotes advances in the domain of…

Background: In this paper we present the approaches and methods employed in order to deal with a large scale multi-label semantic indexing task of biomedical papers. This work was mainly implemented within the context of the BioASQ…

This is an overview of the eleventh edition of the BioASQ challenge in the context of the Conference and Labs of the Evaluation Forum (CLEF) 2023. BioASQ is a series of international challenges promoting advances in large-scale biomedical…

In this paper, we present an overview of the eighth edition of the BioASQ challenge, which ran as a lab in the Conference and Labs of the Evaluation Forum (CLEF) 2020. BioASQ is a series of challenges aiming at the promotion of systems and…

This paper presents a novel prototype for biomedical term normalization of electronic health record excerpts with the Unified Medical Language System (UMLS) Metathesaurus. Despite being multilingual and cross-lingual by design, we first…

Medical articles provide current state of the art treatments and diagnostics to many medical practitioners and professionals. Existing public databases such as MEDLINE contain over 27 million articles, making it difficult to extract…

Biomedical text mining and question-answering are essential yet highly demanding tasks, particularly in the face of the exponential growth of biomedical literature. In this work, we present our participation in the 13th edition of the…

Named entity recognition has been extensively studied on English news texts. However, the transfer to other domains and languages is still a challenging problem. In this paper, we describe the system with which we participated in the first…

Advancing the state-of-the-art in large-scale biomedical semantic indexing and question answering is the main focus of the BioASQ challenge. BioASQ organizes respective tasks where different teams develop systems that are evaluated on the…

This is an overview of the thirteenth edition of the BioASQ challenge in the context of the Conference and Labs of the Evaluation Forum (CLEF) 2025. BioASQ is a series of international challenges promoting advances in large-scale biomedical…

With the increasing number of clinical trial reports generated every day, it is becoming hard to keep up with novel discoveries that inform evidence-based healthcare recommendations. To help automate this process and assist medical experts,…

We computed both Word and Sub-word Embeddings using FastText. For Sub-word embeddings we selected Byte Pair Encoding (BPE) algorithm to represent the sub-words. We evaluated the Biomedical Word Embeddings obtaining better results than…

The recognition and normalization of clinical information, such as tumor morphology mentions, is an important, but complex process consisting of multiple subtasks. In this paper, we describe our system for the CANTEMIST shared task, which…

This paper summarizes the main findings of the ADoBo 2021 shared task, proposed in the context of IberLef 2021. In this task, we invited participants to detect lexical borrowings (coming mostly from English) in Spanish newswire texts. This…

The amount of publicly available biomedical literature has been growing rapidly in recent years, yet question answering systems still struggle to exploit the full potential of this source of data. In a preliminary processing step, many…

We present a submission to the CogALex 2016 shared task on the corpus-based identification of semantic relations, using LexNET (Shwartz and Dagan, 2016), an integrated path-based and distributional method for semantic relation…

This is an overview of the twelfth edition of the BioASQ challenge in the context of the Conference and Labs of the Evaluation Forum (CLEF) 2024. BioASQ is a series of international challenges promoting advances in large-scale biomedical…

We present AUEB's submissions to the BioASQ 6 document and snippet retrieval tasks (parts of Task 6b, Phase A). Our models use novel extensions to deep learning architectures that operate solely over the text of the query and candidate…

Effective biomedical information retrieval requires modeling domain semantics and hierarchical relationships among biomedical texts. Existing biomedical generative retrievers build on coarse binary relevance signals, limiting their ability…

In this technical report, we describe our submission to DCASE2024 Challenge Task6 (Automated Audio Captioning) and Task8 (Language-based Audio Retrieval). We develop our approach building upon the EnCLAP audio captioning framework and…