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The interaction of condensed phase systems with external electric fields is crucial in myriad processes in nature and technology ranging from the field-directed motion of cells (galvanotaxis), to energy storage and conversion systems…

化学物理 · 物理学 2024-09-25 Kit Joll , Philipp Schienbein , Kevin M. Rosso , Jochen Blumberger

We propose a theoretical approach to estimate the permeability coefficient of substrates (permeants) for crossing membranes from donor (D) phase to acceptor (A) phase by means of molecular dynamics (MD) simulation. A fundamental aspect of…

We discuss the electrostatic contribution to the elastic moduli of a cell or artificial membrane placed in an electrolyte and driven by a DC electric field. The field drives ion currents across the membrane, through specific channels, pumps…

软凝聚态物质 · 物理学 2015-05-13 D. Lacoste , G. I. Menon , M. Z. Bazant , J. F. Joanny

This paper presents a model and numerical analysis (simulations) of transmembrane potential induced in biological cell membrane under the influence of externally applied electric field (i.e., electroporation). This model differs from the…

生物物理 · 物理学 2009-11-13 Pratip Shil , Salil Bidaye , Pandit B. Vidyasagar

The physicochemical properties of lipid bilayers (membranes) are closely associated with various cellular functions and are often evaluated using absorption and fluorescence spectroscopies. For instance, by employing fluorescent probes that…

The determination of potentials of mean force for solute insertion in a membrane by means of all-atom molecular dynamics simulations is often hampered by sampling issues. A multiscale approach to conformational sampling was recently…

化学物理 · 物理学 2017-10-09 Roberto Menichetti , Kurt Kremer , Tristan Bereau

We give an explicit formula for the membrane potential of cells in terms of the intracellular and extracellular ionic concentrations, and derive equations for the ionic currents that flow through channels, exchangers and electrogenic pumps.…

生物物理 · 物理学 2007-05-23 L. P. Endresen , K. Hall , J. S. Hoye , J. Myrheim

Molecular dynamics (MD) simulations are used to determine the diffusion coefficients, electrophoretic mobilities and electrical conductivity of a charged colloidal suspension in the salt-free regime as a function of the colloid charge. The…

软凝聚态物质 · 物理学 2010-12-16 Sorin Bastea

Constant potential method molecular dynamics simulation (CPM MD) enables the accurate modelling of atomistic electrode charges when studying the electrode-electrolyte interface at the nanoscale. Here we extend the theoretical framework of…

材料科学 · 物理学 2023-05-26 Shern Ren Tee , Debra J. Searles

Molecular dynamics (MD) simulations of the zeta potential are so poor that it has become common to term their predictions 'apparent'. Here we demonstrate how zeta potentials that agree with measured values can be calculated by: (1)…

计算物理 · 物理学 2013-09-04 Hongyi Liu , Lawrence M. Cathles

Distributed point charge models (DCM) and their minimal variants (MDCM) have been integrated with tools widely used for condensed-phase simulations, including a virial-based barostat and a slow-growth algorithm for thermodynamic…

化学物理 · 物理学 2020-11-03 Mike Devereux , Marco Pezzella , Shampa Raghunathan , Markus Meuwly

A new model for the interaction of an electric pulse with a lipid membrane is proposed. Using this model we show that when a DC electric pulse is applied to an insulating lipid membrane separating fluids with different conductivities, the…

生物物理 · 物理学 2015-05-18 Jonathan T. Schwalbe , Petia M. Vlahovska , Michael J. Miksis

In this paper, we explore osmotic transport by means of molecular dynamics (MD) simulations. We first consider osmosis through a membrane, and investigate the reflection coefficient of an imperfectly semi-permeable membrane, in the dilute…

介观与纳米尺度物理 · 物理学 2017-05-18 Hiroaki Yoshida , Sophie Marbach , Lydéric Bocquet

In this paper we demonstrate a quantitative way to measure the membrane potential of live cells by dielectric spectroscopy. We also show that the values of the membrane potential obtained using our technique are in good agreement with those…

软凝聚态物质 · 物理学 2009-09-15 Corina Bot , Camelia Prodan

We develop a diffuse-interface continuum model for membrane electroporation that couples a phase field for pore geometry to a quasi-static electrolyte potential and a spatially varying leaky-dielectric model for the transmembrane voltage.…

软凝聚态物质 · 物理学 2026-02-10 Saman Seifi , David Salac

Proton exchange membrane fuel cells (PEMFCs) are a promising clean energy technology, offering high efficiency and near-zero operational emissions for stationery and automotive applications. However, their widespread adoption remains…

材料科学 · 物理学 2026-03-30 Jack Jon Hinsch , Kazushi Fujimoto

The molecular dynamics (MD) approach is an effective tool for investigating atomistic dynamical phenomena at the surface of materials under strong laser irradiation. Therefore, numerous laser ablation MD simulation studies have been…

材料科学 · 物理学 2023-02-14 Ryo Kobayashi , Tomohito Otobe

In recent years, constant applied potential molecular dynamics has allowed to study the structure and dynamics of the electrochemical double-layer of a large variety of nanoscale capacitors. Nevertheless it remained impossible to simulate…

材料科学 · 物理学 2021-09-03 Thomas Dufils , Michiel Sprik , Mathieu Salanne

We propose a very simple but realistic enough model which allows to include a large number of molecules in molecular dynamics MD simulations of these bilayers, but nevertheless taking into account molecular charge distributions, flexible…

软凝聚态物质 · 物理学 2009-11-13 Z. Gamba

A computer simulation is used to predict the effects of membrane morphology on the thermal efficiency of direct contact membrane distillation. The mass transfer through the porous microstructure and the heat conduction through the membrane…

计算物理 · 物理学 2019-03-06 Gavin A. Buxton
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