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In this paper we propose Structuring AutoEncoders (SAE). SAEs are neural networks which learn a low dimensional representation of data which are additionally enriched with a desired structure in this low dimensional space. While traditional…

机器学习 · 计算机科学 2019-08-20 Marco Rudolph , Bastian Wandt , Bodo Rosenhahn

We present local ensembles, a method for detecting underspecification -- when many possible predictors are consistent with the training data and model class -- at test time in a pre-trained model. Our method uses local second-order…

机器学习 · 计算机科学 2021-12-09 David Madras , James Atwood , Alex D'Amour

Two-dimensional (2D) carbon networks, from pristine graphene to defect-rich and amorphous monolayers, exhibit a complex structure-energy landscape governed not only by local bonding but also by medium-range order and network topology.…

The discovery of new energetic materials remains a pressing challenge hindered by limited availability of high-quality data. To address this, we have developed generative molecular language models that have been pretrained on extensive…

Accurate prediction of physical properties is critical for discovering and designing novel materials. Machine learning technologies have attracted significant attention in the materials science community for their potential for large-scale…

材料科学 · 物理学 2021-11-24 Boyu Zhang , Mushen Zhou , Jianzhong Wu , Fuchang Gao

Data assimilation (DA) integrates observations with model forecasts to produce optimized atmospheric states, whose physical consistency is critical for stable weather forecasting and reliable climate research. Traditional Bayesian DA…

大气与海洋物理 · 物理学 2026-03-05 Hang Fan , Lei Bai , Ben Fei , Yi Xiao , Kun Chen , Yubao Liu , Yongquan Qu , Fenghua Ling , Pierre Gentine

Unsupervised learning aims at the discovery of hidden structure that drives the observations in the real world. It is essential for success in modern machine learning. Latent variable models are versatile in unsupervised learning and have…

机器学习 · 计算机科学 2016-06-13 Furong Huang

We develop data-driven methods incorporating geometric and topological information to learn parsimonious representations of nonlinear dynamics from observations. The approaches learn nonlinear state-space models of the dynamics for general…

机器学习 · 计算机科学 2025-03-28 Ryan Lopez , Paul J. Atzberger

Feature related particle data analysis plays an important role in many scientific applications such as fluid simulations, cosmology simulations and molecular dynamics. Compared to conventional methods that use hand-crafted feature…

图形学 · 计算机科学 2022-03-23 Haoyu Li , Han-Wei Shen

Modelling long-range contextual relationships is critical for pixel-wise prediction tasks such as semantic segmentation. However, convolutional neural networks (CNNs) are inherently limited to model such dependencies due to the naive…

计算机视觉与模式识别 · 计算机科学 2021-09-01 Xiangtai Li , Li Zhang , Guangliang Cheng , Kuiyuan Yang , Yunhai Tong , Xiatian Zhu , Tao Xiang

The goal of this paper is to present a theoretical and practical introduction to generalized eigendecomposition (GED), which is a robust and flexible framework used for dimension reduction and source separation in multichannel signal…

定量方法 · 定量生物学 2022-01-31 Michael X Cohen

Contextualised word embeddings generated from Neural Language Models (NLMs), such as BERT, represent a word with a vector that considers the semantics of the target word as well its context. On the other hand, static word embeddings such as…

计算与语言 · 计算机科学 2021-10-07 Yi Zhou , Danushka Bollegala

The increased time- and length-scale of classical molecular dynamics simulations have led to raw data flows surpassing storage capacities, necessitating on-the-fly integration of structural analysis algorithms. As a result, algorithms must…

Atomic electron tomography (AET) enables the determination of 3D atomic structures by acquiring a sequence of 2D tomographic projection measurements of a particle and then computationally solving for its underlying 3D representation.…

图像与视频处理 · 电气工程与系统科学 2025-12-18 Nalini M. Singh , Tiffany Chien , Arthur R. C. McCray , Colin Ophus , Laura Waller

The capacity of an embodied agent to understand, predict, and interact with its environment is fundamentally contingent on an internal world model. This paper introduces a novel framework for investigating the formation and adaptation of…

神经与进化计算 · 计算机科学 2025-11-05 Brennen Hill

With the recent advances in machine learning for quantum chemistry, it is now possible to predict the chemical properties of compounds and to generate novel molecules. Existing generative models mostly use a string- or graph-based…

生物大分子 · 定量生物学 2020-10-14 Vitali Nesterov , Mario Wieser , Volker Roth

Geodesic distances on manifolds have numerous applications in image processing, computer graphics and computer vision. In this work, we introduce an approach called `LGGD' (Learned Generalized Geodesic Distances). This method involves…

机器学习 · 计算机科学 2025-03-10 Amitoz Azad , Yuan Fang

Contextualized embeddings are the preferred tool for modeling Lexical Semantic Change (LSC). Current evaluations typically focus on a specific task known as Graded Change Detection (GCD). However, performance comparison across work are…

计算与语言 · 计算机科学 2024-10-31 Francesco Periti , Nina Tahmasebi

Geometric representation-conditioned molecule generation provides an effective paradigm that decouples molecule representation modeling from structure generation. By decoupling molecule generation into two stages-first generating a…

机器学习 · 计算机科学 2026-05-11 Shaoheng Yan , Zian Li , Cai Zhou , Qiaojing Huang , Kai Liu , Muhan Zhang

A natural extension of the descriptors used in the Spectral Neighbor Analysis Potential (SNAP) method is derived to treat atomic interactions in chemically complex systems. Atomic environment descriptors within SNAP are obtained from a…

化学物理 · 物理学 2020-09-09 Mary Alice Cusentino , Mitchell A. Wood , Aidan P. Thompson