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The linking of clinical entities is a crucial part of extracting structured information from clinical texts. It is the process of assigning a code from a medical ontology or classification to a phrase in the text. The International…

计算与语言 · 计算机科学 2025-09-08 Sylvia Vassileva , Ivan Koychev , Svetla Boytcheva

The research explores the utilization of a deep learning model employing an attention mechanism in medical text mining. It targets the challenge of analyzing unstructured text information within medical data. This research seeks to enhance…

计算与语言 · 计算机科学 2024-06-04 Lingxi Xiao , Muqing Li , Yinqiu Feng , Meiqi Wang , Ziyi Zhu , Zexi Chen

Literature analysis facilitates researchers to acquire a good understanding of the development of science and technology. The traditional literature analysis focuses largely on the literature metadata such as topics, authors, abstracts,…

人工智能 · 计算机科学 2021-01-29 Linlin Hou , Ji Zhang , Ou Wu , Ting Yu , Zhen Wang , Zhao Li , Jianliang Gao , Yingchun Ye , Rujing Yao

Event temporal relation (TempRel) is a primary subject of the event relation extraction task. However, the inherent ambiguity of TempRel increases the difficulty of the task. With the rise of prompt engineering, it is important to design…

计算与语言 · 计算机科学 2024-03-25 Xiaobin Zhang , Liangjun Zang , Qianwen Liu , Shuchong Wei , Songlin Hu

This paper introduces an approach that combines the language reasoning capabilities of large language models (LLMs) with the benefits of local training to tackle complex, domain-specific tasks. Specifically, the authors demonstrate their…

计算与语言 · 计算机科学 2023-08-04 V. K. Cody Bumgardner , Aaron Mullen , Sam Armstrong , Caylin Hickey , Jeff Talbert

In this paper, we investigate how semantic relations between concepts extracted from medical documents can be employed to improve the retrieval of medical literature. Semantic relations explicitly represent relatedness between concepts and…

信息检索 · 计算机科学 2019-05-06 Maristella Agosti , Giorgio Maria Di Nunzio , Stefano Marchesin , Gianmaria Silvello

We introduce LLMD, a large language model designed to analyze a patient's medical history based on their medical records. Along with domain knowledge, LLMD is trained on a large corpus of records collected over time and across facilities,…

\textbf{Objective:} We aimed to develop an advanced multi-task large language model (LLM) framework to extract multiple types of information about dietary supplements (DS) from clinical records. \textbf{Methods:} We used four core DS…

计算与语言 · 计算机科学 2025-03-04 Zaifu Zhan , Shuang Zhou , Mingchen Li , Rui Zhang

Most existing methods for biomedical entity recognition task rely on explicit feature engineering where many features either are specific to a particular task or depends on output of other existing NLP tools. Neural architectures have been…

计算与语言 · 计算机科学 2017-08-14 Sunil Kumar Sahu , Ashish Anand

Facts extraction is pivotal for constructing knowledge graphs. Recently, the increasing demand for temporal facts in downstream tasks has led to the emergence of the task of temporal fact extraction. In this paper, we specifically address…

计算与语言 · 计算机科学 2024-06-19 Jianhao Chen , Haoyuan Ouyang , Junyang Ren , Wentao Ding , Wei Hu , Yuzhong Qu

Biomedical literature is a rapidly expanding field of science and technology. Classification of biomedical texts is an essential part of biomedicine research, especially in the field of biology. This work proposes the fine-tuned DistilBERT,…

计算与语言 · 计算机科学 2024-04-23 Ziqing Guo

We hypothesize that explicit integration of contextual information into an Multi-task Learning framework would emphasize the significance of context for boosting performance in jointly learning Named Entity Recognition (NER) and Relation…

计算与语言 · 计算机科学 2021-02-23 Paul Barry , Sam Henry , Meliha Yetisgen , Bridget McInnes , Ozlem Uzuner

Clinical diagnosis prediction models, when provided with a patient's medical history, aim to detect potential diseases early, facilitating timely intervention and improving prognostic outcomes. However, the inherent scarcity of patient data…

计算与语言 · 计算机科学 2025-01-30 Mingyu Derek Ma , Xiaoxuan Wang , Yijia Xiao , Anthony Cuturrufo , Vijay S Nori , Eran Halperin , Wei Wang

Clinical language models have achieved strong performance on downstream tasks by pretraining on domain specific corpora such as discharge summaries and medical notes. However, most approaches treat the electronic health record as a static…

计算与语言 · 计算机科学 2025-04-28 Tatsunori Tanaka , Fi Zheng , Kai Sato , Zhifeng Li , Yuanyun Zhang , Shi Li

We conduct investigations on clinical text machine translation by examining multilingual neural network models using deep learning such as Transformer based structures. Furthermore, to address the language resource imbalance issue, we also…

计算与语言 · 计算机科学 2024-02-22 Lifeng Han , Serge Gladkoff , Gleb Erofeev , Irina Sorokina , Betty Galiano , Goran Nenadic

Health related social media mining is a valuable apparatus for the early recognition of the diverse antagonistic medicinal conditions. Mostly, the existing methods are based on machine learning with knowledge-based learning. This working…

计算与语言 · 计算机科学 2018-04-13 Vinayakumar R , Barathi Ganesh HB , Anand Kumar M , Soman KP

Objective: Electronic health records (EHR) are widely available to complement administrative data-based disease surveillance and healthcare performance evaluation. Defining conditions from EHR is labour-intensive and requires extensive…

计算与语言 · 计算机科学 2025-04-09 Jie Pan , Seungwon Lee , Cheligeer Cheligeer , Elliot A. Martin , Kiarash Riazi , Hude Quan , Na Li

The extraction of lung lesion information from clinical and medical imaging reports is crucial for research on and clinical care of lung-related diseases. Large language models (LLMs) can be effective at interpreting unstructured text in…

计算与语言 · 计算机科学 2024-11-18 Diya Li , Asim Kadav , Aijing Gao , Rui Li , Richard Bourgon

Electronic health records (EHRs) house crucial patient data in clinical notes. As these notes grow in volume and complexity, manual extraction becomes challenging. This work introduces a natural language interface using large language…

信息检索 · 计算机科学 2024-07-03 Ran Elgedawy , Ioana Danciu , Maria Mahbub , Sudarshan Srinivasan

Medications often impose temporal constraints on everyday patient activity. Violations of such medical temporal constraints (MTCs) lead to a lack of treatment adherence, in addition to poor health outcomes and increased healthcare expenses.…

计算与语言 · 计算机科学 2023-10-17 Parker Seegmiller , Joseph Gatto , Madhusudan Basak , Diane Cook , Hassan Ghasemzadeh , John Stankovic , Sarah Preum