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We present ongoing work on a tool that consists of two parts: (i) A raw micro-level abstract world simulator with an interface to (ii) a 3D game engine, translator of raw abstract simulator data to photorealistic graphics. Part (i)…

多智能体系统 · 计算机科学 2017-11-22 Olivier Van Acker , Oded Lachish , Graeme Burnett

Neural Cellular Automata (NCAs) offer a way to study the growth of two-dimensional artificial organisms from a single seed cell. From the outset, NCA-grown organisms have had issues with stability, their natural boundary often breaking down…

神经与进化计算 · 计算机科学 2025-12-11 James Stovold

The fundamental understanding of how cells physically interact with each other and their environment is key to understanding their organisation in living tissues. Over the past decades several computational methods have been developed to…

定量方法 · 定量生物学 2026-01-22 Paul Van Liedekerke , Jiří Pešek , Kevin Alessandri , Dirk Drasdo

This paper is a brief update on developments in the BioDynaMo project, a new platform for computer simulations for biological research. We will discuss the new capabilities of the simulator, important new concepts simulation methodology as…

神经与进化计算 · 计算机科学 2018-01-22 Leonard Johard , Lukas Breitwieser , Alberto Di Meglio , Marco Manca , Manuel Mazzara , Max Talanov

Rapid advance of experimental techniques provides an unprecedented in-depth view into complex developmental processes. Still, little is known on how the complexity of multicellular organisms evolved by elaborating developmental programs and…

分子网络 · 定量生物学 2021-07-16 Somya Mani , Tsvi Tlusty

We propose a generic model of eco-systems, with a {\it hierarchical} food web structure. In our computer simulations we let the eco-system evolve continuously for so long that that we can monitor extinctions as well as speciations over…

种群与进化 · 定量生物学 2009-11-10 Debashish Chowdhury , Dietrich Stauffer

Cellular Automata (CA) theory is a discrete model that represents the state of each of its cells from a finite set of possible values which evolve in time according to a pre-defined set of transition rules. CA have been applied to a number…

计算机视觉与模式识别 · 计算机科学 2017-05-22 Karttikeya Mangalam , K S Venkatesh

This chapter presents SMuGA, an integration of symbiogenesis with the Multiset Genetic Algorithm (MuGA). The symbiogenetic approach used here is based on the host-parasite model with the novelty of varying the length of parasites along the…

神经与进化计算 · 计算机科学 2015-02-04 Luis Correia , Antonio Manso

Information-theoretic fitness functions are becoming increasingly popular to produce generally useful, task-independent behaviors. One such universal function, dubbed empowerment, measures the amount of control an agent exerts on its…

神经与进化计算 · 计算机科学 2024-07-30 Caitlin Grasso , Josh Bongard

Neuro-inspired models and systems have great potential for applications in unconventional computing. Often, the mechanisms of biological neurons are modeled or mimicked in simulated or physical systems in an attempt to harness some of the…

神经与进化计算 · 计算机科学 2021-10-18 Jørgen Jensen Farner , Håkon Weydahl , Ruben Jahren , Ola Huse Ramstad , Stefano Nichele , Kristine Heiney

Number-conserving cellular automata are discrete dynamical systems that simulate interacting particles like e.g. grains of sand. In an earlier paper, I had already derived a uniform construction for all transition rules of one-dimensional…

元胞自动机与格子气 · 物理学 2025-06-02 Markus Redeker

A cellular automata (CA) configuration is constructed that exhibits emergent failover. The configuration is based on standard Game of Life rules. Gliders and glider-guns form the core messaging structure in the configuration. The blinker is…

人工智能 · 计算机科学 2012-01-04 Shailesh Kumar , Shrisha Rao

Cellular automata generate spatially extended, temporally persistent emergent structures from local update rules. No general method derives the mechanisms of that generation from the rule itself; existing tools reconstruct structure from…

元胞自动机与格子气 · 物理学 2026-04-02 Manuel Pita

This paper introduces Differentiable Logic Cellular Automata (DiffLogic CA), a novel combination of Neural Cellular Automata (NCA) and Differentiable Logic Gates Networks (DLGNs). The fundamental computation units of the model are…

人工智能 · 计算机科学 2025-06-06 Pietro Miotti , Eyvind Niklasson , Ettore Randazzo , Alexander Mordvintsev

The Cellular Potts Model (CPM) is a widely used simulation paradigm for systems of interacting cells that has been used to study scenarios ranging from plant development to morphogenesis, tumour growth and cell migration. Despite their wide…

组织与器官 · 定量生物学 2023-12-18 Shabaz Sultan , Sapna Devi , Scott N. Mueller , Johannes Textor

A new class of deterministic dynamical systems, termed semipredictable dynamical systems, is presented. The spatiotemporal evolution of these systems have both predictable and unpredictable traits, as found in natural complex systems. We…

混沌动力学 · 物理学 2016-04-15 Vladimir García-Morales

The emergence of complex behaviors in cellular automata is an area that has been widely developed in recent years with the intention to generate and analyze automata that produce space-moving patterns or gliders that interact in a periodic…

Engineering simple, artificial models of living cells allows synthetic biologists to study cellular functions under well-controlled conditions. Reconstituting multicellular behaviors with synthetic cell-mimics is still a challenge because…

生物大分子 · 定量生物学 2021-04-29 Imre Banlaki , Francois-Xavier Lehr , Henrike Niederholtmeyer

Simulacra Naturae is a data-driven media installation that explores collective care through the entanglement of biological computation, material ecologies, and generative systems. The work translates pre-recorded neural activity from brain…

多媒体 · 计算机科学 2025-09-04 Nefeli Manoudaki , Mert Toka , Iason Paterakis , Diarmid Flatley

We study the problem of generating arbitrarily large environments to improve the throughput of multi-robot systems. Prior work proposes Quality Diversity (QD) algorithms as an effective method for optimizing the environments of automated…

机器人学 · 计算机科学 2023-10-31 Yulun Zhang , Matthew C. Fontaine , Varun Bhatt , Stefanos Nikolaidis , Jiaoyang Li