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Deep neural networks for medical image classification often fail to generalize consistently in clinical practice due to violations of the i.i.d. assumption and opaque decision-making. This paper examines interpretability in deep neural…

Feature selection is indispensable in microbiome data analysis, but it can be particularly challenging as microbiome data sets are high-dimensional, underdetermined, sparse and compositional. Great efforts have recently been made on…

The 2021 Image Similarity Challenge introduced a dataset to serve as a new benchmark to evaluate recent image copy detection methods. There were 200 participants to the competition. This paper presents a quantitative and qualitative…

Reproducibility is essential to reliable scientific discovery in high-throughput experiments. In this work we propose a unified approach to measure the reproducibility of findings identified from replicate experiments and identify putative…

应用统计 · 统计学 2011-10-24 Qunhua Li , James B. Brown , Haiyan Huang , Peter J. Bickel

Reproducibility of recommender systems research has come under scrutiny during recent years. Along with works focusing on repeating experiments with certain algorithms, the research community has also started discussing various aspects of…

信息检索 · 计算机科学 2023-07-28 Balázs Hidasi , Ádám Tibor Czapp

This is the second part of a small-scale explorative study in an effort to assess reproducibility issues specific to scientometrics research. This effort is motivated by the desire to generate empirical data to inform debates about…

数字图书馆 · 计算机科学 2018-04-16 Theresa Velden , Sybille Hinze , Andrea Scharnhorst , Jesper Wiborg Schneider , Ludo Waltman

International benchmarking competitions have become fundamental for the comparative performance assessment of image analysis methods. However, little attention has been given to investigating what can be learnt from these competitions. Do…

计算机视觉与模式识别 · 计算机科学 2023-04-03 Matthias Eisenmann , Annika Reinke , Vivienn Weru , Minu Dietlinde Tizabi , Fabian Isensee , Tim J. Adler , Sharib Ali , Vincent Andrearczyk , Marc Aubreville , Ujjwal Baid , Spyridon Bakas , Niranjan Balu , Sophia Bano , Jorge Bernal , Sebastian Bodenstedt , Alessandro Casella , Veronika Cheplygina , Marie Daum , Marleen de Bruijne , Adrien Depeursinge , Reuben Dorent , Jan Egger , David G. Ellis , Sandy Engelhardt , Melanie Ganz , Noha Ghatwary , Gabriel Girard , Patrick Godau , Anubha Gupta , Lasse Hansen , Kanako Harada , Mattias Heinrich , Nicholas Heller , Alessa Hering , Arnaud Huaulmé , Pierre Jannin , Ali Emre Kavur , Oldřich Kodym , Michal Kozubek , Jianning Li , Hongwei Li , Jun Ma , Carlos Martín-Isla , Bjoern Menze , Alison Noble , Valentin Oreiller , Nicolas Padoy , Sarthak Pati , Kelly Payette , Tim Rädsch , Jonathan Rafael-Patiño , Vivek Singh Bawa , Stefanie Speidel , Carole H. Sudre , Kimberlin van Wijnen , Martin Wagner , Donglai Wei , Amine Yamlahi , Moi Hoon Yap , Chun Yuan , Maximilian Zenk , Aneeq Zia , David Zimmerer , Dogu Baran Aydogan , Binod Bhattarai , Louise Bloch , Raphael Brüngel , Jihoon Cho , Chanyeol Choi , Qi Dou , Ivan Ezhov , Christoph M. Friedrich , Clifton Fuller , Rebati Raman Gaire , Adrian Galdran , Álvaro García Faura , Maria Grammatikopoulou , SeulGi Hong , Mostafa Jahanifar , Ikbeom Jang , Abdolrahim Kadkhodamohammadi , Inha Kang , Florian Kofler , Satoshi Kondo , Hugo Kuijf , Mingxing Li , Minh Huan Luu , Tomaž Martinčič , Pedro Morais , Mohamed A. Naser , Bruno Oliveira , David Owen , Subeen Pang , Jinah Park , Sung-Hong Park , Szymon Płotka , Elodie Puybareau , Nasir Rajpoot , Kanghyun Ryu , Numan Saeed , Adam Shephard , Pengcheng Shi , Dejan Štepec , Ronast Subedi , Guillaume Tochon , Helena R. Torres , Helene Urien , João L. Vilaça , Kareem Abdul Wahid , Haojie Wang , Jiacheng Wang , Liansheng Wang , Xiyue Wang , Benedikt Wiestler , Marek Wodzinski , Fangfang Xia , Juanying Xie , Zhiwei Xiong , Sen Yang , Yanwu Yang , Zixuan Zhao , Klaus Maier-Hein , Paul F. Jäger , Annette Kopp-Schneider , Lena Maier-Hein

In this paper peer review reliability is investigated based on peer ratings of research teams at two Belgian universities. It is found that outcomes can be substantially influenced by the different ways in which experts attribute ratings.…

数字图书馆 · 计算机科学 2013-07-29 Nadine Rons , Eric Spruyt

Existing performance measures rank delineation algorithms inconsistently, which makes it difficult to decide which one is best in any given situation. We show that these inconsistencies stem from design flaws that make the metrics…

计算机视觉与模式识别 · 计算机科学 2019-12-02 Leonardo Citraro , Mateusz Koziński , Pascal Fua

Binary classification is a fundamental task in machine learning, with applications spanning various scientific domains. Whether scientists are conducting fundamental research or refining practical applications, they typically assess and…

机器学习 · 计算机科学 2023-10-20 Attila Fazekas , György Kovács

Robustness and generalizability in medical image segmentation are often hindered by scarcity and limited diversity of training data, which stands in contrast to the variability encountered during inference. While conventional strategies --…

计算机视觉与模式识别 · 计算机科学 2024-12-18 Yimu Pan , Sitao Zhang , Alison D. Gernand , Jeffery A. Goldstein , James Z. Wang

Large Language Models have gained remarkable interest in industry and academia. The increasing interest in LLMs in academia is also reflected in the number of publications on this topic over the last years. For instance, alone 78 of the…

We introduce a reproducible, bias-resistant machine learning framework that integrates domain-informed feature engineering, nested cross-validation, and calibrated decision-threshold optimization for small-sample neuroimaging data.…

机器学习 · 计算机科学 2026-02-04 Jagan Mohan Reddy Dwarampudi , Jennifer L Purks , Joshua Wong , Renjie Hu , Tania Banerjee

We initiate a formal study of reproducibility in optimization. We define a quantitative measure of reproducibility of optimization procedures in the face of noisy or error-prone operations such as inexact or stochastic gradient computations…

最优化与控制 · 数学 2022-12-06 Kwangjun Ahn , Prateek Jain , Ziwei Ji , Satyen Kale , Praneeth Netrapalli , Gil I. Shamir

The federated learning paradigm is wellsuited for the field of medical image analysis, as it can effectively cope with machine learning on isolated multicenter data while protecting the privacy of participating parties. However, current…

计算机视觉与模式识别 · 计算机科学 2025-04-08 Zhekai Zhou , Guibo Luo , Mingzhi Chen , Zhenyu Weng , Yuesheng Zhu

We describe a project-based introduction to reproducible and collaborative neuroimaging analysis. Traditional teaching on neuroimaging usually consists of a series of lectures that emphasize the big picture rather than the foundations on…

其他统计学 · 统计学 2018-10-23 K. Jarrod Millman , Matthew Brett , Ross Barnowski , Jean-Baptiste Poline

Accurate uncertainty estimation is a critical need for the medical imaging community. A variety of methods have been proposed, all direct extensions of classification uncertainty estimations techniques. The independent pixel-wise…

图像与视频处理 · 电气工程与系统科学 2022-06-16 Thierry Judge , Olivier Bernard , Mihaela Porumb , Agis Chartsias , Arian Beqiri , Pierre-Marc Jodoin

In 2015 the Open Science Collaboration (OSC) (Nosek et al 2015) published a highly influential paper which claimed that a large fraction of published results in the psychological sciences were not reproducible. In this article we review…

应用统计 · 统计学 2026-02-18 Anthony Almudevar , Jacob Almudevar

Difficulties in replication and reproducibility of empirical evidences in machine learning research have become a prominent topic in recent years. Ensuring that machine learning research results are sound and reliable requires…

机器学习 · 计算机科学 2024-03-20 Tobias Hille , Maximilian Stubbemann , Tom Hanika

The consideration of predictive uncertainty in medical imaging with deep learning is of utmost importance. We apply estimation of both aleatoric and epistemic uncertainty by variational Bayesian inference with Monte Carlo dropout to…

图像与视频处理 · 电气工程与系统科学 2021-04-27 Max-Heinrich Laves , Sontje Ihler , Jacob F. Fast , Lüder A. Kahrs , Tobias Ortmaier