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Long non-coding RNA, microRNA, and messenger RNA enable key regulations of various biological processes through a variety of diverse interaction mechanisms. Identifying the interactions and cross-talk between these heterogeneous RNA classes…

分子网络 · 定量生物学 2020-12-10 Nhat Tran , Jean Gao

Deep learning natural language processing models often use vector word embeddings, such as word2vec or GloVe, to represent words. A discrete sequence of words can be much more easily integrated with downstream neural layers if it is…

机器学习 · 计算机科学 2020-03-04 Aliakbar Panahi , Seyran Saeedi , Tom Arodz

Self-supervised pre-training methods have brought remarkable breakthroughs in the understanding of text, image, and speech. Recent developments in genomics has also adopted these pre-training methods for genome understanding. However, they…

机器学习 · 计算机科学 2022-04-15 Samuel Cahyawijaya , Tiezheng Yu , Zihan Liu , Tiffany T. W. Mak , Xiaopu Zhou , Nancy Y. Ip , Pascale Fung

This project intends to study the image representation based on attention mechanism and multimodal data. By adding multiple pattern layers to the attribute model, the semantic and hidden layers of image content are integrated. The word…

计算与语言 · 计算机科学 2024-06-14 Dan Sun , Yaxin Liang , Yining Yang , Yuhan Ma , Qishi Zhan , Erdi Gao

Word embeddings are reliable feature representations of words used to obtain high quality results for various NLP applications. Uncontextualized word embeddings are used in many NLP tasks today, especially in resource-limited settings where…

计算与语言 · 计算机科学 2020-11-16 Kian Kenyon-Dean , Edward Newell , Jackie Chi Kit Cheung

Distributed word representation (a.k.a. word embedding) is a key focus in natural language processing (NLP). As a highly successful word embedding model, Word2Vec offers an efficient method for learning distributed word representations on…

计算与语言 · 计算机科学 2024-07-30 Chaohao Yang , Chris Ding

Word2vec is a popular family of algorithms for unsupervised training of dense vector representations of words on large text corpuses. The resulting vectors have been shown to capture semantic relationships among their corresponding words,…

We propose Lib2Vec, a novel self-supervised framework to efficiently learn meaningful vector representations of library cells, enabling ML models to capture essential cell semantics. The framework comprises three key components: (1) an…

机器学习 · 计算机科学 2025-04-01 Rongjian Liang , Yi-Chen Lu , Wen-Hao Liu , Haoxing Ren

Neural word representations have proven useful in Natural Language Processing (NLP) tasks due to their ability to efficiently model complex semantic and syntactic word relationships. However, most techniques model only one representation…

计算与语言 · 计算机科学 2015-11-23 Andrew Trask , Phil Michalak , John Liu

PSDVec is a Python/Perl toolbox that learns word embeddings, i.e. the mapping of words in a natural language to continuous vectors which encode the semantic/syntactic regularities between the words. PSDVec implements a word embedding…

计算与语言 · 计算机科学 2016-07-05 Shaohua Li , Jun Zhu , Chunyan Miao

Malware classification is an important and challenging problem in information security. Modern malware classification techniques rely on machine learning models that can be trained on features such as opcode sequences, API calls, and byte…

密码学与安全 · 计算机科学 2021-03-05 Aparna Sunil Kale , Fabio Di Troia , Mark Stamp

In recent years, graph representation learning has gained significant popularity, which aims to generate node embeddings that capture features of graphs. One of the methods to achieve this is employing a technique called random walks that…

机器学习 · 计算机科学 2022-10-13 Deniz Gurevin , Mohsin Shan , Tong Geng , Weiwen Jiang , Caiwen Ding , Omer Khan

In this paper we propose the application of feature hashing to create word embeddings for natural language processing. Feature hashing has been used successfully to create document vectors in related tasks like document classification. In…

计算与语言 · 计算机科学 2017-04-18 Luis Argerich , Joaquín Torré Zaffaroni , Matías J Cano

Network embedding techniques inspired by word2vec represent an effective unsupervised relational learning model. Commonly, by means of a Skip-Gram procedure, these techniques learn low dimensional vector representations of the nodes in a…

机器学习 · 计算机科学 2019-07-23 Pedro Almagro-Blanco , Fernando Sancho-Caparrini

Dialogue act recognition is an important component of a large number of natural language processing pipelines. Many research works have been carried out in this area, but relatively few investigate deep neural networks and word embeddings.…

计算与语言 · 计算机科学 2020-10-23 Christophe Cerisara , Pavel Kral , Ladislav Lenc

The rapid advancement of Multimodal Large Language Models (MLLMs) has extended CLIP-based frameworks to produce powerful, universal embeddings for retrieval tasks. However, existing methods primarily focus on natural images, offering…

计算机视觉与模式识别 · 计算机科学 2025-11-03 Weijian Jian , Yajun Zhang , Dawei Liang , Chunyu Xie , Yixiao He , Dawei Leng , Yuhui Yin

While Large Language Models (LLMs) become ever more dominant, classic pre-trained word embeddings sustain their relevance through computational efficiency and nuanced linguistic interpretation. Drawing from recent studies demonstrating that…

计算与语言 · 计算机科学 2023-11-21 Haoran Zhao , Jake Ryland Williams

Ribonucleic acid (RNA) plays fundamental roles in biological systems, from carrying genetic information to performing enzymatic function. Understanding and designing RNA can enable novel therapeutic application and biotechnological…

生物大分子 · 定量生物学 2025-12-01 Dana Rubin , Allan dos Santos Costa , Manvitha Ponnapati , Joseph Jacobson

Pre-trained word embeddings are widely used for transfer learning in natural language processing. The embeddings are continuous and distributed representations of the words that preserve their similarities in compact Euclidean spaces.…

计算与语言 · 计算机科学 2020-06-25 Halid Ziya Yerebakan , Parmeet Bhatia , Yoshihisa Shinagawa

Neural embeddings are a popular set of methods for representing words, phrases or text as a low dimensional vector (typically 50-500 dimensions). However, it is difficult to interpret these dimensions in a meaningful manner, and creating…

计算与语言 · 计算机科学 2018-01-10 Neil R. Smalheiser , Gary Bonifield