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New biological assays like Perturb-seq link highly parallel CRISPR interventions to a high-dimensional transcriptomic readout, providing insight into gene regulatory networks. Causal gene regulatory networks can be represented by directed…

机器学习 · 统计学 2024-02-22 Albert Xue , Jingyou Rao , Sriram Sankararaman , Harold Pimentel

Causal inference with observational data critically relies on untestable and extra-statistical assumptions that have (sometimes) testable implications. Well-known sets of assumptions that are sufficient to justify the causal interpretation…

统计方法学 · 统计学 2024-02-20 Pablo Geraldo Bastías

Temporal Knowledge Graphs (TKGs) represent dynamic facts as timestamped relations between entities. TKG completion involves forecasting missing or future links, requiring models to reason over time-evolving structure. While LLMs show…

机器学习 · 计算机科学 2025-05-26 Ömer Faruk Akgül , Feiyu Zhu , Yuxin Yang , Rajgopal Kannan , Viktor Prasanna

Adoption of recently developed methods from machine learning has given rise to creation of drug-discovery knowledge graphs (KG) that utilize the interconnected nature of the domain. Graph-based modelling of the data, combined with KG…

机器学习 · 计算机科学 2022-07-27 Stephen Bonner , Ufuk Kirik , Ola Engkvist , Jian Tang , Ian P Barrett

The pursuit of long-term fairness involves the interplay between decision-making and the underlying data generating process. In this paper, through causal modeling with a directed acyclic graph (DAG) on the decision-distribution interplay,…

机器学习 · 计算机科学 2023-06-07 Zeyu Tang , Yatong Chen , Yang Liu , Kun Zhang

Due to its human-interpretability and invariance properties, Directed Acyclic Graph (DAG) has been a foundational tool across various areas of AI research, leading to significant advancements. However, DAG learning remains highly…

机器学习 · 计算机科学 2025-06-24 Naiyu Yin , Tian Gao , Yue Yu

The analysis of temporal networks heavily depends on the analysis of time-respecting paths. However, before being able to model and analyze the time-respecting paths, we have to infer the timescales at which the temporal edges influence…

物理与社会 · 物理学 2023-01-30 Luka V. Petrović , Anatol Wegner , Ingo Scholtes

In the context of inferring a Bayesian network structure (directed acyclic graph, DAG for short), we devise a non-reversible continuous time Markov chain, the ``Causal Zig-Zag sampler'', that targets a probability distribution over classes…

机器学习 · 统计学 2024-09-12 Moritz Schauer , Marcel Wienöbst

A well-studied challenge that arises in the structure learning problem of causal directed acyclic graphs (DAG) is that using observational data, one can only learn the graph up to a "Markov equivalence class" (MEC). The remaining undirected…

机器学习 · 计算机科学 2022-05-20 Vibhor Porwal , Piyush Srivastava , Gaurav Sinha

Directed acyclic graphs (DAGs) are a class of graphs commonly used in practice, with examples that include electronic circuits, Bayesian networks, and neural architectures. While many effective encoders exist for DAGs, it remains…

机器学习 · 计算机科学 2025-05-30 Michael Sun , Orion Foo , Gang Liu , Wojciech Matusik , Jie Chen

Causal theory is now widely developed with many applications to medicine and public health. However within the discipline of reliability, although causation is a key concept in this field, there has been much less theoretical attention. In…

人工智能 · 计算机科学 2020-02-17 Xuewen Yu , Jim Q. Smith , Linda Nichols

A reliable knowledge structure is a prerequisite for building effective adaptive learning systems and intelligent tutoring systems. Pursuing an explainable and trustworthy knowledge structure, we propose a method for constructing causal…

人工智能 · 计算机科学 2024-06-27 Yuang Wei , Yizhou Zhou , Yuan-Hao Jiang , Bo Jiang

Graphical structures estimated by causal learning algorithms from time series data can provide misleading causal information if the causal timescale of the generating process fails to match the measurement timescale of the data. Existing…

机器学习 · 统计学 2024-05-22 Mohammadsajad Abavisani , David Danks , Sergey Plis

A growing body of work has begun to study intervention design for efficient structure learning of causal directed acyclic graphs (DAGs). A typical setting is a causally sufficient setting, i.e. a system with no latent confounders, selection…

Causal graphs (CGs) are compact representations of the knowledge of the data generating processes behind the data distributions. When a CG is available, e.g., from the domain knowledge, we can infer the conditional independence (CI)…

机器学习 · 计算机科学 2021-08-18 Takeshi Teshima , Masashi Sugiyama

Bayesian networks faithfully represent the symmetric conditional independences existing between the components of a random vector. Staged trees are an extension of Bayesian networks for categorical random vectors whose graph represents…

机器学习 · 统计学 2022-03-10 Manuele Leonelli , Gherardo Varando

Real causal processes may contain feedback loops and change over time. In this paper, we model cycles and non-stationary distributions using a mixture of directed acyclic graphs (DAGs). We then study the conditional independence (CI)…

统计理论 · 数学 2019-09-16 Eric V. Strobl

In the last few years, the solution to Knowledge Graph (KG) completion via learning embeddings of entities and relations has attracted a surge of interest. Temporal KGs(TKGs) extend traditional Knowledge Graphs (KGs) by associating static…

人工智能 · 计算机科学 2023-02-14 Zhongwu Chen , Chengjin Xu , Fenglong Su , Zhen Huang , You Dou

DAG models are statistical models satisfying a collection of conditional independence relations encoded by the nonedges of a directed acyclic graph (DAG) $\mathcal{G}$. Such models are used to model complex cause-effect systems across a…

组合数学 · 数学 2017-06-21 Adityanarayanan Radhakrishnan , Liam Solus , Caroline Uhler

The use of generative AI to create text descriptions from graphs has mostly focused on knowledge graphs, which connect concepts using facts. In this work we explore the capability of large pretrained language models to generate text from…

计算与语言 · 计算机科学 2024-04-09 Atharva Phatak , Vijay K. Mago , Ameeta Agrawal , Aravind Inbasekaran , Philippe J. Giabbanelli