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Due to SARS-CoV-2 (Severe Acute Respiratory Syndrome Coronavirus 2) being a novel virus, there are currently no known effective antiviral drugs capable of slowing its progress. To accelerate the discovery of potential drug candidates,…

生物大分子 · 定量生物学 2020-09-29 Lokesh Agrawal , Thanasis Poullikkas , Scott Eisenhower , Carlo Monsanto , Ranjith Kumar Bakku

Deep generative models are attracting great attention for molecular design with desired properties. Most existing models generate molecules by sequentially adding atoms. This often renders generated molecules with less correlation with…

机器学习 · 计算机科学 2021-11-29 Seonghwan Seo , Jaechang Lim , Woo Youn Kim

De novo drug design is a pivotal issue in pharmacology and a new area of focus in AI for science research. A central challenge in this field is to generate molecules with specific properties while also producing a wide range of diverse…

生物大分子 · 定量生物学 2024-01-15 Xiuyuan Hu , Guoqing Liu , Yang Zhao , Hao Zhang

Deep generative models have been praised for their ability to learn smooth latent representation of images, text, and audio, which can then be used to generate new, plausible data. However, current generative models are unable to work with…

Accurate prediction of drug target interactions is critical for accelerating drug discovery and elucidating complex biological mechanisms. In this work, we frame drug target prediction as a link prediction task on heterogeneous biomedical…

计算与语言 · 计算机科学 2025-03-12 Haji Gul , Abdul Ghani Naim , Ajaz Ahmad Bhat

Coronavirus Disease 2019 (COVID-19) has been creating a worldwide pandemic situation. Repurposing drugs, already shown to be free of harmful side effects, for the treatment of COVID-19 patients is an important option in launching novel…

The aim of the inverse chemical design is to develop new molecules with given optimized molecular properties or objectives. Recently, generative deep learning (DL) networks are considered as the state-of-the-art in inverse chemical design…

机器学习 · 计算机科学 2019-10-10 Haoran Wei , Mariefel Olarte , Garrett B. Goh

De novo molecular design has facilitated the exploration of large chemical space to accelerate drug discovery. Structure-based de novo method can overcome the data scarcity of active ligands by incorporating drug-target interaction into…

生物大分子 · 定量生物学 2022-09-16 Yaqin Li , Lingli Li , Yongjin Xu , Yi Yu

Rational design of covalent inhibitors requires simultaneously optimizing multiple properties, such as binding affinity, target selectivity, or electrophilic reactivity. This presents a multi-objective problem not easily addressed by…

机器学习 · 计算机科学 2026-04-23 Renee Gil

Drug discovery aims to find novel compounds with specified chemical property profiles. In terms of generative modeling, the goal is to learn to sample molecules in the intersection of multiple property constraints. This task becomes…

机器学习 · 计算机科学 2020-07-06 Wengong Jin , Regina Barzilay , Tommi Jaakkola

Molecule optimization is a fundamental task for accelerating drug discovery, with the goal of generating new valid molecules that maximize multiple drug properties while maintaining similarity to the input molecule. Existing generative…

机器学习 · 计算机科学 2024-07-02 Tianfan Fu , Cao Xiao , Xinhao Li , Lucas M. Glass , Jimeng Sun

Molecular generation plays an important role in drug discovery and materials science, especially in data-scarce scenarios where traditional generative models often struggle to achieve satisfactory conditional generalization. To address this…

机器学习 · 计算机科学 2025-05-13 Zimo Yan , Jie Zhang , Zheng Xie , Chang Liu , Yizhen Liu , Yiping Song

Deep generative models have recently emerged as a promising de novo drug design method. In this respect, deep generative conditional variational autoencoder (CVAE) models are a powerful approach for generating novel molecules with desired…

机器学习 · 计算机科学 2023-08-21 Guang Jun Nicholas Ang , De Tao Irwin Chin , Bingquan Shen

In clinical scenarios, multiple medical images with different views are usually generated at the same time, and they have high semantic consistency. However, the existing medical report generation methods cannot exploit the rich multi-view…

计算机视觉与模式识别 · 计算机科学 2023-04-18 Ruizhi Wang , Xiangtao Wang , Zhenghua Xu , Wenting Xu , Junyang Chen , Thomas Lukasiewicz

The COVID-19 pandemic caused by the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) has spurred unprecedented and concerted worldwide research to curtail and eradicate this pathogen. SARS-CoV-2 has four structural proteins:…

生物物理 · 物理学 2022-09-26 Siyu Li , Roya Zandi

Drug Discovery is a fundamental and ever-evolving field of research. The design of new candidate molecules requires large amounts of time and money, and computational methods are being increasingly employed to cut these costs. Machine…

机器学习 · 统计学 2021-05-28 Pietro Bongini , Monica Bianchini , Franco Scarselli

Graph generation techniques are increasingly being adopted for drug discovery. Previous graph generation approaches have utilized relatively small molecular building blocks such as atoms or simple cycles, limiting their effectiveness to…

机器学习 · 计算机科学 2020-04-21 Wengong Jin , Regina Barzilay , Tommi Jaakkola

Optical Chemical Structure Recognition (OCSR) is critical for converting 2D molecular diagrams from printed literature into machine-readable formats. While Vision-Language Models have shown promise in end-to-end OCR tasks, their direct…

计算机视觉与模式识别 · 计算机科学 2026-04-22 Haocheng Tang , Xingyu Dang , Junmei Wang

Computationally generating novel synthetically accessible compounds with high affinity and low toxicity is a great challenge in drug design. Machine-learning models beyond conventional pharmacophoric methods have shown promise in generating…

生物大分子 · 定量生物学 2023-10-30 Nicholas T. Runcie , Antonia S. J. S. Mey

COVID-19 is a devastating respiratory and inflammatory illness caused by a new coronavirus that is rapidly spreading throughout the human population. Over the past 6 months, severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the…