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This paper studies the problem of learning causal structures from observational data. We reformulate the Structural Equation Model (SEM) with additive noises in a form parameterized by binary graph adjacency matrix and show that, if the…

机器学习 · 计算机科学 2022-01-11 Ignavier Ng , Shengyu Zhu , Zhuangyan Fang , Haoyang Li , Zhitang Chen , Jun Wang

The working mechanisms of complex natural systems tend to abide by concise and profound partial differential equations (PDEs). Methods that directly mine equations from data are called PDE discovery, which reveals consistent physical laws…

机器学习 · 计算机科学 2023-03-17 Mengge Du , Yuntian Chen , Dongxiao Zhang

Motivation: Cellular Electron CryoTomography (CECT) enables 3D visualization of cellular organization at near-native state and in sub-molecular resolution, making it a powerful tool for analyzing structures of macromolecular complexes and…

定量方法 · 定量生物学 2017-04-14 Min Xu , Xiaoqi Chai , Hariank Muthakana , Xiaodan Liang , Ge Yang , Tzviya Zeev-Ben-Mordehai , Eric Xing

This paper introduces a new knowledge distillation method, called education distillation (ED), which is inspired by the structured and progressive nature of human learning. ED mimics the educational stages of primary school, middle school,…

人工智能 · 计算机科学 2025-03-25 Ling Feng , Tianhao Wu , Xiangrong Ren , Zhi Jing , Xuliang Duan

Elucidating the reasoning process with structured explanations from question to answer is crucial, as it significantly enhances the interpretability, traceability, and trustworthiness of question-answering (QA) systems. However, structured…

计算与语言 · 计算机科学 2024-09-30 Guoxin Chen , Kexin Tang , Chao Yang , Fuying Ye , Yu Qiao , Yiming Qian

Machine learning for molecules holds great potential for efficiently exploring the vast chemical space and thus streamlining the drug discovery process by facilitating the design of new therapeutic molecules. Deep generative models have…

机器学习 · 计算机科学 2023-07-03 Johanna Sommer , Leon Hetzel , David Lüdke , Fabian Theis , Stephan Günnemann

Machine learning has transformed material discovery for inorganic compounds and small molecules, yet polymers remain largely inaccessible to these methods. While data scarcity is often cited as the primary bottleneck, we demonstrate that…

机器学习 · 计算机科学 2025-12-09 Jihun Ahn , Gabriella Pasya Irianti , Vikram Thapar , Su-Mi Hur

High-quality 3D reconstructions from endoscopy video play an important role in many clinical applications, including surgical navigation where they enable direct video-CT registration. While many methods exist for general multi-view 3D…

计算机视觉与模式识别 · 计算机科学 2020-03-30 Xingtong Liu , Yiping Zheng , Benjamin Killeen , Masaru Ishii , Gregory D. Hager , Russell H. Taylor , Mathias Unberath

Machine learning in drug discovery has been focused on virtual screening of molecular libraries using discriminative models. Generative models are an entirely different approach that learn to represent and optimize molecules in a continuous…

定量方法 · 定量生物学 2020-11-17 Matthew Ragoza , Tomohide Masuda , David Ryan Koes

In this work, we observe a counterintuitive phenomenon in self-supervised learning (SSL): longer training may impair the performance of dense prediction tasks (e.g., semantic segmentation). We refer to this phenomenon as Self-supervised…

计算机视觉与模式识别 · 计算机科学 2025-10-21 Siran Dai , Qianqian Xu , Peisong Wen , Yang Liu , Qingming Huang

In recent years, artificial intelligence has played an important role on accelerating the whole process of drug discovery. Various of molecular representation schemes of different modals (e.g. textual sequence or graph) are developed. By…

机器学习 · 计算机科学 2022-11-28 Tianyu Wu , Yang Tang , Qiyu Sun , Luolin Xiong

Models that accurately predict properties based on chemical structure are valuable tools in drug discovery. However, for many properties, public and private training sets are typically small, and it is difficult for the models to generalize…

定量方法 · 定量生物学 2022-11-08 Oscar Méndez-Lucio , Christos Nicolaou , Berton Earnshaw

Speech emotion recognition (SER) has long benefited from the adoption of deep learning methodologies. Deeper models -- with more layers and more trainable parameters -- are generally perceived as being `better' by the SER community. This…

声音 · 计算机科学 2025-08-05 Andreas Triantafyllopoulos , Anton Batliner , Björn W. Schuller

Despite tremendous progress over the past decade, deep learning methods generally fall short of human-level systematic generalization. It has been argued that explicitly capturing the underlying structure of data should allow connectionist…

机器学习 · 计算机科学 2023-04-26 Andrea Dittadi

The two main impediments to continual learning are catastrophic forgetting and memory limitations on the storage of data. To cope with these challenges, we propose a novel, cognitively-inspired approach which trains autoencoders with Neural…

计算机视觉与模式识别 · 计算机科学 2021-05-04 Ali Ayub , Alan R. Wagner

Purpose: Large Language Models (LLMs) like GPT (Generative Pre-trained Transformer) from OpenAI and LLaMA (Large Language Model Meta AI) from Meta AI are increasingly recognized for their potential in the field of cheminformatics,…

生物大分子 · 定量生物学 2024-05-22 Shaghayegh Sadeghi , Alan Bui , Ali Forooghi , Jianguo Lu , Alioune Ngom

Language models demonstrate fundamental abilities in syntax, semantics, and reasoning, though their performance often depends significantly on the inputs they process. This study introduces TSIS (Simplified TSID) and its variants:TSISD…

人工智能 · 计算机科学 2024-11-19 Juan-Ni Wu , Tong Wang , Li-Juan Tang , Hai-Long Wu , Ru-Qin Yu

Recurrent neural networks have been widely used to generate millions of de novo molecules in a known chemical space. These deep generative models are typically setup with LSTM or GRU units and trained with canonical SMILEs. In this study,…

机器学习 · 计算机科学 2019-09-12 Ruud van Deursen , Peter Ertl , Igor V. Tetko , Guillaume Godin

Modelling musical structure is vital yet challenging for artificial intelligence systems that generate symbolic music compositions. This literature review dissects the evolution of techniques for incorporating coherent structure, from…

声音 · 计算机科学 2024-03-14 Keshav Bhandari , Simon Colton

Understanding how chemical language models (CLMs) learn chemical meaning from molecular string representations, rather than only surface-level string patterns, is an important question in chemical representation learning and machine…

机器学习 · 计算机科学 2026-05-12 Zehao Li , Yasuhiro Yoshikai , Shumpei Nemoto , Hiroyuki Kusuhara , Tadahaya Mizuno