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Thematic analysis (TA) is widely used in health research to extract patterns from patient interviews, yet manual TA faces challenges in scalability and reproducibility. LLM-based automation can help, but existing approaches produce…

In-context learning (ICL) enhances large language models (LLMs) by incorporating demonstration examples, yet its effectiveness heavily depends on the quality of selected examples. Current methods typically use text embeddings to measure…

人工智能 · 计算机科学 2025-12-02 Jiale Fu , Yaqing Wang , Simeng Han , Jiaming Fan , Xu Yang

This paper proposes a data-driven method to automatically construct graph-based document representations. Building upon the recent work of Bugue\~no and de Melo (2025), we leverage the dynamic sliding-window attention module to effectively…

计算与语言 · 计算机科学 2026-03-03 Ruangrin Ldallitsakool , Margarita Bugueño , Gerard de Melo

Recent advancements in natural language processing (NLP) have led to automation in various domains. However, clinical NLP often relies on benchmark datasets that may not reflect real-world scenarios accurately. Automatic ICD coding, a vital…

计算与语言 · 计算机科学 2024-07-25 Abhijith R. Beeravolu , Mirjam Jonkman , Sami Azam , Friso De Boer

Clinical trials are central to medical progress because they help improve understanding of human health and the healthcare system. They play a key role in discovering new ways to detect, prevent, or treat diseases, and it is essential that…

计算与语言 · 计算机科学 2025-10-16 Surya Tejaswi Yerramsetty , Almas Fathimah

Information extraction from textual documents such as hospital records and healthrelated user discussions has become a topic of intense interest. The task of medical concept coding is to map a variable length text to medical concepts and…

计算与语言 · 计算机科学 2018-05-03 Elena Tutubalina , Zulfat Miftahutdinov

Clinical concept extraction often begins with clinical Named Entity Recognition (NER). Often trained on annotated clinical notes, clinical NER models tend to struggle with tagging clinical entities in user queries because of the structural…

信息检索 · 计算机科学 2019-12-25 Yue Zhao , John Handley

Automatically extracting useful information from electronic medical records along with conducting disease diagnoses is a promising task for both clinical decision support(CDS) and neural language processing(NLP). Most of the existing…

计算与语言 · 计算机科学 2018-04-24 Zhongliang Yang , Yongfeng Huang , Yiran Jiang , Yuxi Sun , Yu-Jin Zhan , Pengcheng Luo

Clinical notes contain an extensive record of a patient's health status, such as smoking status or the presence of heart conditions. However, this detail is not replicated within the structured data of electronic health systems.…

计算与语言 · 计算机科学 2020-09-18 Andriy Mulyar , Elliot Schumacher , Masoud Rouhizadeh , Mark Dredze

This paper proposes CODER: contrastive learning on knowledge graphs for cross-lingual medical term representation. CODER is designed for medical term normalization by providing close vector representations for different terms that represent…

计算与语言 · 计算机科学 2021-05-19 Zheng Yuan , Zhengyun Zhao , Haixia Sun , Jiao Li , Fei Wang , Sheng Yu

In clinical artificial intelligence (AI), graph representation learning, mainly through graph neural networks (GNNs), stands out for its capability to capture intricate relationships within structured clinical datasets. With diverse data --…

机器学习 · 计算机科学 2023-12-13 Ruth Johnson , Michelle M. Li , Ayush Noori , Owen Queen , Marinka Zitnik

International Classification of Disease (ICD) codes are widely used for encoding diagnoses in electronic health records (EHR). Automated methods have been developed over the years for predicting biomedical responses using EHR that borrow…

统计方法学 · 统计学 2021-08-05 Sanvesh Srivastava , Zongyi Xu , Yunyi Li , W. Nick Street , Stephanie Gilbertson-White

Unstructured clinical data can serve as a unique and rich source of information that can meaningfully inform clinical practice. Extracting the most pertinent context from such data is critical for exploiting its true potential toward…

计算与语言 · 计算机科学 2025-07-18 Fahmida Liza Piya , Rahmatollah Beheshti

The automated capturing and summarization of medical consultations has the potential to reduce the administrative burden in healthcare. Consultations are structured conversations that broadly follow a guideline with a systematic examination…

软件工程 · 计算机科学 2022-05-04 Omar ElAssy , Rik de Vendt , Fabiano Dalpiaz , Sjaak Brinkkemper

Aiming at the limitations of traditional medical decision system in processing large-scale heterogeneous medical data and realizing highly personalized recommendation, this paper introduces a personalized medical decision algorithm…

机器学习 · 计算机科学 2024-05-29 Yafeng Yan , Shuyao He , Zhou Yu , Jiajie Yuan , Ziang Liu , Yan Chen

Scientific models hold the key to better understanding and predicting the behavior of complex systems. The most comprehensive manifestation of a scientific model, including crucial assumptions and parameters that underpin its usability, is…

Clinical notes are an efficient way to record patient information but are notoriously hard to decipher for non-experts. Automatically simplifying medical text can empower patients with valuable information about their health, while saving…

Due to increased access to clinical trial outcomes and analysis, researchers and scientists are able to iterate or improve upon relevant approaches more effectively. However, the metrics and related results of clinical trials typically do…

计算与语言 · 计算机科学 2021-01-12 Shwetha Bharadwaj , Melanie Laffin

We introduce a novel graph-based Retrieval-Augmented Generation (RAG) framework specifically designed for the medical domain, called \textbf{MedGraphRAG}, aimed at enhancing Large Language Model (LLM) capabilities for generating…

计算机视觉与模式识别 · 计算机科学 2024-10-17 Junde Wu , Jiayuan Zhu , Yunli Qi , Jingkun Chen , Min Xu , Filippo Menolascina , Vicente Grau

Self-consistency-based approaches, which involve repeatedly sampling multiple outputs and selecting the most consistent one as the final response, prove to be remarkably effective in improving the factual accuracy of large language models.…