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Chemical reactions in cell are subject to intense stochastic fluctuations. An important question is how the fundamental physiological behavior of cell is kept stable against those noisy perturbations. In this paper a stochastic model of…

分子网络 · 定量生物学 2009-11-13 Yurie Okabe , Masaki Sasai

The fluctuations of the charge on an electrode contain information on the microscopic correlations within the adjacent fluid and their effect on the electronic properties of the interface. We investigate these fluctuations using molecular…

Voltage-dependent ion channels determine the electric properties of axonal cell membranes. They not only allow the passage of ions through the cell membrane but also contribute to an additional charging of the cell membrane resulting in the…

神经元与认知 · 定量生物学 2009-11-13 G. Schmid , I. Goychuk , P. Hanggi

Ion channels are proteins with a hole down the middle embedded in cell membranes. Membranes form insulating structures and the channels through them allow and control the movement of charged particles, spherical ions, mostly Na+, K+, Ca++,…

生物大分子 · 定量生物学 2015-05-11 Bob Eisenberg

We study the charge noise $S_Q$ in Josephson qubits produced by fluctuating two level systems (TLS) with electric dipole moments in the substrate. The TLS are driven by an alternating electric field of angular frequency $\Omega$ and…

超导电性 · 物理学 2009-11-13 Magdalena Constantin , Clare C. Yu , John M. Martinis

Stochasticity is both exploited and controlled by cells. Although the intrinsic stochasticity inherent in biochemistry is relatively well understood, cellular variation, or 'noise', is predominantly generated by interactions of the system…

分子网络 · 定量生物学 2008-09-18 Vahid Shahrezaei , Julien F Ollivier , Peter S Swain

We report an in-vivo electromechanical Atomic Force Microscopy (AFM) study of charge distribution on the cell wall of Gram plus Rhodococcus wratislaviensis bacteria, naturally adherent to a glass substrate, in physiological conditions. The…

软凝聚态物质 · 物理学 2015-06-11 Christian Marliere , Samia Dhahri

Quantum mechanics can strongly influence the noise properties of mesoscopic devices. To probe this effect we have measured the current fluctuations at high-frequency (5-90 GHz) using a superconductor-insulator-superconductor tunnel junction…

介观与纳米尺度物理 · 物理学 2009-11-10 R. Deblock , E. Onac , L. Gurevich , L. P. Kouwenhoven

Solid-state systems which mimic two-level atoms are being actively developed. Improving the quantum coherence of these systems, for instance spin qubits or single photon emitters using semiconductor quantum dots, involves dealing with…

Higher moments of distributions of net charge and baryon number in heavy-ion collisions have been proposed as signals of fundamental QCD phase transitions. In order to better understand background processes for these observables, models are…

核理论 · 物理学 2021-01-04 Scott Pratt , Rachel Steinhorst

From synthetic active devices such as self-propelling Janus colloids to micro-organisms like bacteria, micro-algae, living cells in tissues, active fluctuations are ubiquitous. Thermodynamics of small systems involving thermal as well as…

统计力学 · 物理学 2020-01-29 Arnab Saha , Rahul Marathe

Many biological systems are appropriately viewed as passive inclusions immersed in an active bath: from proteins on active membranes to microscopic swimmers confined by boundaries. The non-equilibrium forces exerted by the active bath on…

软凝聚态物质 · 物理学 2020-07-06 Alpha A. Lee , Dominic Vella , John S. Wettlaufer

We investigate the dynamics of single microparticles immersed in water that are driven out of equilibrium in the presence of an additional external colored noise. As a case study, we trap a single polystyrene particle in water with optical…

统计力学 · 物理学 2014-09-17 Pau Mestres , Ignacio A. Martinez , Antonio Ortiz-Ambriz , Raul A. Rica , Edgar Roldan

Bacteria can form a great variety of spatially heterogeneous cell density patterns, ranging from simple concentric rings to dynamical spiral waves appearing in growing colonies. These pattern formation phenomena are important as they…

种群与进化 · 定量生物学 2025-01-17 John S. Chuang , Riccardo Rao , Stanislas Leibler

Dust particles immersed in a plasma environment become charged through the collection of electrons and ions at random times, causing the dust charge to fluctuate about an equilibrium value. Small grains (with radii less than 1 \mum) or…

等离子体物理 · 物理学 2018-05-16 Lorin S. Matthews , Babak Shotorban , Truell W. Hyde

The design of biologically-inspired wireless communication systems using bacteria as the basic element of the system is initially motivated by a phenomenon called \emph{Quorum Sensing}. Due to high randomness in the individual behavior of a…

信息论 · 计算机科学 2016-11-17 Arash Einolghozati , Mohsen Sardari , Faramarz Fekri

Bacteria sense a diverse range of environmental analytes with high sensitivity and temporal resolution. Engineering and synthetic biology approaches enabled harnessing this capability through development of whole-cell biosensors that…

We analyze the non-equilibrium shape fluctuations of giant unilamellar vesicles encapsulating motile bacteria. Owing to bacteria--membrane collisions, we experimentally observe a significant increase in the magnitude of membrane…

软凝聚态物质 · 物理学 2020-04-22 Sho C. Takatori , Amaresh Sahu

Living systems operate far from thermodynamic equilibrium. Enzymatic activity can induce broken detailed balance at the molecular scale. This molecular scale breaking of detailed balance is crucial to achieve biological functions such as…

生物物理 · 物理学 2018-05-02 F. Gnesotto , F. Mura , J. Gladrow , C. P. Broedersz

We study the behavior of two macroions with dissociable charge groups, regulated by local variables such as pH and electrostatic potential, immersed in a mono-valent salt solution, considering cases where the net charge can either change…

化学物理 · 物理学 2015-06-23 Natasa Adzic , Rudolf Podgornik