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Single-cell gene expression measurements encode variability spanning molecular noise, cell-to-cell heterogeneity, and technical artifacts. Mechanistic stochastic models provide powerful approaches to disentangle these sources, yet inferring…

定量方法 · 定量生物学 2025-09-19 Christopher E. Miles

Time-to-event endpoints show an increasing popularity in phase II cancer trials. The standard statistical tool for such one-armed survival trials is the one-sample log-rank test. Its distributional properties are commonly derived in the…

统计方法学 · 统计学 2026-03-02 Moritz Fabian Danzer , Andreas Faldum , Rene Schmidt

We present a latent variable model for predicting the relationship between a pair of text sequences. Unlike previous auto-encoding--based approaches that consider each sequence separately, our proposed framework utilizes both sequences…

计算与语言 · 计算机科学 2019-06-05 Jihun Choi , Taeuk Kim , Sang-goo Lee

Ultra high-throughput sequencing of transcriptomes (RNA-Seq) is a widely used method for quantifying gene expression levels due to its low cost, high accuracy and wide dynamic range for detection. However, the nature of RNA-Seq makes it…

统计方法学 · 统计学 2016-08-30 Hui Jiang , Tianyu Zhan

The impact of machine learning models on healthcare will depend on the degree of trust that healthcare professionals place in the predictions made by these models. In this paper, we present a method to provide people with clinical expertise…

机器学习 · 计算机科学 2021-03-05 Aniruddh Raghu , John Guttag , Katherine Young , Eugene Pomerantsev , Adrian V. Dalca , Collin M. Stultz

High throughput technologies have become the practice of choice for comparative studies in biomedical applications. Limited number of sample points due to sequencing cost or access to organisms of interest necessitates the development of…

统计方法学 · 统计学 2018-07-17 Ariana Broumand , Siamak Zamani Dadaneh

For a high-dimensional linear model with a finite number of covariates measured with error, we study statistical inference on the parameters associated with the error-prone covariates, and propose a new corrected decorrelated score test and…

统计方法学 · 统计学 2020-01-29 Mengyan Li , Runze Li , Yanyuan Ma

For robust statistical inference it is crucial to obtain a good estimator of the variance of the proposed estimator of the statistical estimand. A commonly used estimator of the variance for an asymptotically linear estimator is the sample…

统计方法学 · 统计学 2025-05-19 Yunwen Ji , Mark van der Laan , Alan Hubbard

An informative sampling design leads to the selection of units whose inclusion probabilities are correlated with the response variable of interest. Model inference performed on the resulting observed sample will be biased for the population…

统计方法学 · 统计学 2018-06-29 Matthew R. Williams , Terrance D. Savitsky

Considering the issue of estimating small probabilities p, ie. measuring a rare domain F = {x | g(x) > q} with respect to the distribution of a random vector X, Multilevel Splitting strategies (also called Subset Simulation) aim at writing…

统计计算 · 统计学 2015-09-10 Clément Walter

We consider the problem of segmenting cell nuclei instances from Hematoxylin and Eosin (H&E) stains with weak supervision. While most recent works focus on improving the segmentation quality, this is usually insufficient for instance…

计算机视觉与模式识别 · 计算机科学 2022-03-15 Lin Geng Foo , Rui En Ho , Jiamei Sun , Alexander Binder

We consider the problem of inferring a latent function in a probabilistic model of data. When dependencies of the latent function are specified by a Gaussian process and the data likelihood is complex, efficient computation often involve…

机器学习 · 统计学 2018-07-23 Martin Tegner , Benjamin Bloem-Reddy , Stephen Roberts

If the same data is used for both clustering and for testing a null hypothesis that is formulated in terms of the estimated clusters, then the traditional hypothesis testing framework often fails to control the Type I error. Gao et al.…

统计方法学 · 统计学 2024-05-28 Youngjoo Yun , Yinqiu He

In multivariate statistics, the question of finding direct interactions can be formulated as a problem of network inference - or network reconstruction - for which the Gaussian graphical model (GGM) provides a canonical framework.…

统计方法学 · 统计学 2018-06-11 Julien Chiquet , Mahendra Mariadassou , Stéphane Robin

Questions of understanding and quantifying the representation and amount of information in organisms have become a central part of biological research, as they potentially hold the key to fundamental advances. In this paper, we demonstrate…

基因组学 · 定量生物学 2007-10-30 H. M. Aktulga , I. Kontoyiannis , L. A. Lyznik , L. Szpankowski , A. Y. Grama , W. Szpankowski

We consider inference for M-estimators after model selection using a sparsity-inducing penalty. While existing methods for this task require bespoke inference procedures, we propose a simpler approach, which relies on two insights: (i)…

统计方法学 · 统计学 2026-01-21 Ronan Perry , Snigdha Panigrahi , Daniela Witten

This paper considers inference when there is a single treated cluster and a fixed number of control clusters, a setting that is common in empirical work, especially in difference-in-differences designs. We use the t-statistic and develop…

计量经济学 · 经济学 2025-11-11 Chun Pong Lau , Xinran Li

This article presents an Analysis of Variance model for functional data that explicitly incorporates phase variability through a time-warping component, allowing for a unified approach to estimation and inference in presence of amplitude…

统计方法学 · 统计学 2013-11-11 Daniel Gervini , Patrick A. Carter

The quality of the inferences we make from pathogen sequence data is determined by the number and composition of pathogen sequences that make up the sample used to drive that inference. However, there remains limited guidance on how to best…

种群与进化 · 定量生物学 2023-06-13 Lucy D'Agostino McGowan , Shirlee Wohl , Justin Lessler

We consider the problem of independence testing for two univariate random variables in a sequential setting. By leveraging recent developments on safe, anytime-valid inference, we propose a test with time-uniform type I error control and…

统计方法学 · 统计学 2024-01-29 Alexander Henzi , Michael Law