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The evolutionary trajectory of a protein through sequence space is constrained by function and three-dimensional (3D) structure. Residues in spatial proximity tend to co-evolve, yet attempts to invert the evolutionary record to identify…

The Gene or DNA sequence in every cell does not control genetic properties on its own; Rather, this is done through translation of DNA into protein and subsequent formation of a certain 3D structure. The biological function of a protein is…

计算工程、金融与科学 · 计算机科学 2019-05-30 Leila Khalatbari , Mohammad Reza Kangavari , Saeid Hosseini , Hongzhi Yin , Ngai-Man Cheung

Deep reinforcement learning (RL) algorithms can learn complex policies to optimize agent operation over time. RL algorithms have shown promising results in solving complicated problems in recent years. However, their application on…

机器学习 · 计算机科学 2021-09-29 Hamed Khorasgani , Haiyan Wang , Chetan Gupta , Susumu Serita

Deep Reinforcement Learning (DRL) has achieved remarkable success in sequential decision-making tasks across diverse domains, yet its reliance on black-box neural architectures hinders interpretability, trust, and deployment in high-stakes…

机器学习 · 计算机科学 2025-02-12 Zelei Cheng , Jiahao Yu , Xinyu Xing

Deep Learning has the hierarchical network architecture to represent the complicated features of input patterns. Such architecture is well known to represent higher learning capability compared with some conventional models if the best set…

神经与进化计算 · 计算机科学 2018-07-12 Takumi Ichimura , Shin Kamada

Biological networks provide insight into the complex organization of biological processes in a cell at the system level. They are an effective tool for understanding the comprehensive map of functional interactions, finding the functional…

分子网络 · 定量生物学 2017-09-14 Somaye Hashemifar

The use of robotics in controlled environments has flourished over the last several decades and training robots to perform tasks using control strategies developed from dynamical models of their hardware have proven very effective. However,…

机器人学 · 计算机科学 2019-07-16 Zach Dwiel , Madhavun Candadai , Mariano Phielipp

Pre-training plays a vital role in various vision tasks, such as object recognition and detection. Commonly used pre-training methods, which typically rely on randomized approaches like uniform or Gaussian distributions to initialize model…

计算机视觉与模式识别 · 计算机科学 2024-11-15 Chen-Long Duan , Yong Li , Xiu-Shen Wei , Lin Zhao

Reinforcement learning is typically treated as a uniform, data-driven optimization process, where updates are guided by rewards and temporal-difference errors without explicitly exploiting global structure. In contrast, dynamic programming…

机器学习 · 计算机科学 2026-04-21 Ivo Nowak

Deep reinforcement learning (DRL) has gained widespread adoption in control and decision-making tasks due to its strong performance in dynamic environments. However, DRL agents are vulnerable to noisy observations and adversarial attacks,…

机器学习 · 计算机科学 2025-04-01 Derui Wang , Kristen Moore , Diksha Goel , Minjune Kim , Gang Li , Yang Li , Robin Doss , Minhui Xue , Bo Li , Seyit Camtepe , Liming Zhu

Traditional economic models often rely on fixed assumptions about market dynamics, limiting their ability to capture the complexities and stochastic nature of real-world scenarios. However, reality is more complex and includes noise, making…

The Reinforcement Learning (RL) paradigm has been an essential tool for automating robotic tasks. Despite the advances in RL, it is still not widely adopted in the industry due to the need for an expensive large amount of robot interaction…

机器人学 · 计算机科学 2022-04-29 Cristian C. Beltran-Hernandez , Damien Petit , Ixchel G. Ramirez-Alpizar , Kensuke Harada

Deep Learning has a hierarchical network architecture to represent the complicated feature of input patterns. The adaptive structural learning method of Deep Belief Network (DBN) has been developed. The method can discover an optimal number…

神经与进化计算 · 计算机科学 2018-08-28 Shin Kamada , Takumi Ichimura , Toshihide Harada

Autonomous driving systems are always built on motion-related modules such as the planner and the controller. An accurate and robust trajectory tracking method is indispensable for these motion-related modules as a primitive routine.…

机器人学 · 计算机科学 2024-03-26 Yinda Xu , Lidong Yu

Understanding protein structure-function relationships is a key challenge in computational biology, with applications across the biotechnology and pharmaceutical industries. While it is known that protein structure directly impacts protein…

生物大分子 · 定量生物学 2020-11-02 Nicolas Swenson , Aditi S. Krishnapriyan , Aydin Buluc , Dmitriy Morozov , Katherine Yelick

Deep reinforcement learning (DRL) has achieved groundbreaking successes in a wide variety of robotic applications. A natural consequence is the adoption of this paradigm for safety-critical tasks, where human safety and expensive hardware…

机器人学 · 计算机科学 2022-06-22 Davide Corsi , Raz Yerushalmi , Guy Amir , Alessandro Farinelli , David Harel , Guy Katz

Deep Reinforcement Learning (RL) has demonstrated success in solving complex sequential decision-making problems by integrating neural networks with the RL framework. However, training deep RL models poses several challenges, such as the…

机器学习 · 计算机科学 2025-09-30 Sooraj Sathish , Keshav Goyal , Raghuram Bharadwaj Diddigi

De novo molecular design has facilitated the exploration of large chemical space to accelerate drug discovery. Structure-based de novo method can overcome the data scarcity of active ligands by incorporating drug-target interaction into…

生物大分子 · 定量生物学 2022-09-16 Yaqin Li , Lingli Li , Yongjin Xu , Yi Yu

We discuss a stochastic approach for reconstructing the native structures of proteins from the knowledge of the "effective connectivity", which is a one-dimensional structural profile constructed as a linear combination of the eigenvectors…

生物物理 · 物理学 2009-01-20 Katrin Wolff , Michele Vendruscolo , Markus Porto

Residual learning has recently surfaced as an effective means of constructing very deep neural networks for object recognition. However, current incarnations of residual networks do not allow for the modeling and integration of complex…

计算机视觉与模式识别 · 计算机科学 2016-07-21 Brendan Jou , Shih-Fu Chang