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The massive trend of integrating data-driven AI capabilities into traditional software systems is rising new intriguing challenges. One of such challenges is achieving a smooth transition from the explorative phase of Machine Learning…

软件工程 · 计算机科学 2022-05-25 Luigi Quaranta

Diverse presentation formats play a pivotal role in effectively conveying code and analytical processes during data analysis. One increasingly popular format is tutorial videos, particularly those based on Jupyter notebooks, which offer an…

人机交互 · 计算机科学 2024-08-05 Yang Ouyang , Leixian Shen , Yun Wang , Quan Li

Computational notebook software such as Jupyter Notebook is popular for data science tasks. Numerous computational notebooks are available on the Web and reusable; however, searching for computational notebooks manually is a tedious task,…

信息检索 · 计算机科学 2022-02-01 Misato Horiuchi , Yuya Sasaki , Chuan Xiao , Makoto Onizuka

Jupyter Notebook is a popular tool among data analysts and scientists for working with data. It provides a way to combine code, documentation, and visualizations in a single, interactive environment, facilitating code reuse. While code…

软件工程 · 计算机科学 2023-02-24 Mingke Yang , Yuming Zhou , Bixin Li , Yutian Tang

Computational methods for predicting and designing biomolecular structures are increasingly powerful. While previous approaches relied on physics-based modeling, modern tools, such as AlphaFold2 in CASP14, leverage artificial intelligence…

生物大分子 · 定量生物学 2025-11-05 Michael Chungyoun , Gabe Au , Britnie Carpentier , Sreevarsha Puvada , Courtney Thomas , Jeffrey J. Gray

We introduce QSTToolkit, a Python library for performing quantum state tomography (QST) on optical quantum state measurement data. The toolkit integrates traditional Maximum Likelihood Estimation (MLE) with deep learning-based techniques to…

量子物理 · 物理学 2025-03-19 George FitzGerald , Will Yeadon

With the advent of Open Science, researchers have started to publish their research artefacts (i. e., data, software, and other products of the investigations) in order to allow others to reproduce their investigations. While this…

数字图书馆 · 计算机科学 2019-05-02 Max Schröder , Frank Krüger , Sascha Spors

Large language models (LLMs) benefit greatly from prompt engineering, with in-context learning standing as a pivital technique. While former approaches have provided various ways to construct the demonstrations used for in-context learning,…

人工智能 · 计算机科学 2024-06-18 Yiming Tang , Bin Dong

In this article we describe how we successfully incorporated data analysis in Python in a first-year laboratory course without significantly altering the course structure and without overburdening students. We show how we created and used…

物理教育 · 物理学 2023-09-13 Eugenio Tufino , Stefano Oss , Micol Alemani

Motivation: Novel machine learning and statistical modeling studies rely on standardized comparisons to existing methods using well-studied benchmark datasets. Few tools exist that provide rapid access to many of these datasets through a…

Automated unit test generation is an established research field, and mature test generation tools exist for statically typed programming languages such as Java. It is, however, substantially more difficult to automatically generate…

软件工程 · 计算机科学 2020-10-07 Stephan Lukasczyk , Florian Kroiß , Gordon Fraser

Proper experimental record-keeping is an important cornerstone in research and development for the purpose of auditing. The gold standard of record-keeping is based on the judicious use of physical, permanent notebooks. However, advances in…

数字图书馆 · 计算机科学 2023-02-22 Yong-Yao Ng , Maurice HT Ling

Interactive notebooks are a precious tool for creating graphical user interfaces and teaching materials. Python and Jupyter are becoming increasingly popular in this context, with Jupyter widgets at the core of the interactive…

物理教育 · 物理学 2024-09-02 Dou Du , Taylor J. Baird , Kristjan Eimre , Sara Bonella , Giovanni Pizzi

The increasing reliance on machine learning (ML) models for decision-making requires high-quality training data. However, access to real-world datasets is often restricted due to privacy concerns, proprietary restrictions, and incomplete…

机器学习 · 计算机科学 2026-04-30 Alessandra Agostini , Andrea Maurino , Blerina Spahiu

Despite being the most popular programming language, Python has not yet received enough attention from the community. To the best of our knowledge, there is no general static analysis framework proposed to facilitate the implementation of…

软件工程 · 计算机科学 2022-02-25 Li Li , Jiawei Wang , Haowei Quan

Computational reproducibility refers to obtaining consistent results when rerunning an experiment. Jupyter Notebook, a web-based computational notebook application, facilitates running, publishing, and sharing computational experiments…

软件工程 · 计算机科学 2025-09-30 A S M Shahadat Hossain , Colin Brown , David Koop , Tanu Malik

It is important for researchers to understand precisely how data scientists turn raw data into insights, including typical programming patterns, workflow, and methodology. This paper contributes a novel system, called DataInquirer, that…

人机交互 · 计算机科学 2024-05-29 Jinjin Zhao , Avidgor Gal , Sanjay Krishnan

Academic trade requires juggling multiple variants of the same content published in different formats: manuscripts, presentations, posters and computational notebooks. The need to track versions to accommodate for the…

编程语言 · 计算机科学 2021-07-15 Kacper Sokol , Peter Flach

As a representative literate programming platform, Jupyter is widely adopted by developers, data analysts, and researchers for replication, data sharing, documentation, interactive data visualization, and more. Understanding the bugs in the…

软件工程 · 计算机科学 2025-06-18 Yutian Tang , Hongchen Cao , Yuxi Chen , David Lo

PiML (read $\pi$-ML, /`pai`em`el/) is an integrated and open-access Python toolbox for interpretable machine learning model development and model diagnostics. It is designed with machine learning workflows in both low-code and high-code…

机器学习 · 计算机科学 2023-12-21 Agus Sudjianto , Aijun Zhang , Zebin Yang , Yu Su , Ningzhou Zeng