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In this paper we present a novel approach to abstractive summarization of patient hospitalisation histories. We applied an encoder-decoder framework with Longformer neural network as an encoder and BERT as a decoder. Our experiments show…

计算与语言 · 计算机科学 2022-04-06 Alexander Yalunin , Dmitriy Umerenkov , Vladimir Kokh

Disease name recognition and normalization, which is generally called biomedical entity linking, is a fundamental process in biomedical text mining. Recently, neural joint learning of both tasks has been proposed to utilize the mutual…

计算与语言 · 计算机科学 2021-04-22 Shogo Ujiie , Hayate Iso , Shuntaro Yada , Shoko Wakamiya , Eiji Aramaki

Concept normalization in free-form texts is a crucial step in every text-mining pipeline. Neural architectures based on Bidirectional Encoder Representations from Transformers (BERT) have achieved state-of-the-art results in the biomedical…

计算与语言 · 计算机科学 2021-01-26 Zulfat Miftahutdinov , Artur Kadurin , Roman Kudrin , Elena Tutubalina

Biomedical entity linking aims to map biomedical mentions, such as diseases and drugs, to standard entities in a given knowledge base. The specific challenge in this context is that the same biomedical entity can have a wide range of names,…

计算与语言 · 计算机科学 2021-05-25 Lihu Chen , Gaël Varoquaux , Fabian M. Suchanek

Long-form clinical summarization of hospital admissions has real-world significance because of its potential to help both clinicians and patients. The faithfulness of summaries is critical to their safe usage in clinical settings. To better…

计算与语言 · 计算机科学 2023-03-08 Griffin Adams , Jason Zucker , Noémie Elhadad

Citation graphs can be helpful in generating high-quality summaries of scientific papers, where references of a scientific paper and their correlations can provide additional knowledge for contextualising its background and main…

信息检索 · 计算机科学 2023-02-24 Zheheng Luo , Qianqian Xie , Sophia Ananiadou

State-of-the-art abstractive summarization systems often generate \emph{hallucinations}; i.e., content that is not directly inferable from the source text. Despite being assumed incorrect, we find that much hallucinated content is factual,…

计算与语言 · 计算机科学 2021-12-07 Meng Cao , Yue Dong , Jackie Chi Kit Cheung

Recent advances in natural language processing have enabled automation of a wide range of tasks, including machine translation, named entity recognition, and sentiment analysis. Automated summarization of documents, or groups of documents,…

We introduce a simple but flexible mechanism to learn an intermediate plan to ground the generation of abstractive summaries. Specifically, we prepend (or prompt) target summaries with entity chains -- ordered sequences of entities…

计算与语言 · 计算机科学 2021-09-07 Shashi Narayan , Yao Zhao , Joshua Maynez , Gonçalo Simoes , Vitaly Nikolaev , Ryan McDonald

Brief Hospital Course (BHC) summaries are succinct summaries of an entire hospital encounter, embedded within discharge summaries, written by senior clinicians responsible for the overall care of a patient. Methods to automatically produce…

计算与语言 · 计算机科学 2023-04-11 Thomas Searle , Zina Ibrahim , James Teo , Richard Dobson

Neural network models have shown excellent fluency and performance when applied to abstractive summarization. Many approaches to neural abstractive summarization involve the introduction of significant inductive bias, exemplified through…

计算与语言 · 计算机科学 2019-09-04 Luke de Oliveira , Alfredo Láinez Rodrigo

Learning representations for knowledge base entities and concepts is becoming increasingly important for NLP applications. However, recent entity embedding methods have relied on structured resources that are expensive to create for new…

计算与语言 · 计算机科学 2018-07-11 Denis Newman-Griffis , Albert M. Lai , Eric Fosler-Lussier

In a world of proliferating data, the ability to rapidly summarize text is growing in importance. Automatic summarization of text can be thought of as a sequence to sequence problem. Another area of natural language processing that solves a…

计算与语言 · 计算机科学 2018-10-23 Jacob Krantz , Jugal Kalita

Existing fact-checking models for biomedical claims are typically trained on synthetic or well-worded data and hardly transfer to social media content. This mismatch can be mitigated by adapting the social media input to mimic the focused…

计算与语言 · 计算机科学 2023-04-12 Amelie Wührl , Lara Grimminger , Roman Klinger

Automatic medical text simplification plays a key role in improving health literacy by making complex biomedical research accessible to diverse readers. However, most existing resources assume a single generic audience, overlooking the wide…

计算与语言 · 计算机科学 2025-12-04 Rohan Charudatt Salvi , Chirag Chawla , Dhruv Jain , Swapnil Panigrahi , Md Shad Akhtar , Shweta Yadav

Abstractive summarization, the task of generating a concise summary of input documents, requires: (1) reasoning over the source document to determine the salient pieces of information scattered across the long document, and (2) composing a…

Entity summarization is the problem of computing an optimal compact summary for an entity by selecting a size-constrained subset of triples from RDF data. Entity summarization supports a multiplicity of applications and has led to fruitful…

信息检索 · 计算机科学 2020-03-26 Qingxia Liu , Gong Cheng , Kalpa Gunaratna , Yuzhong Qu

Radiology report summarization is a crucial task that can help doctors quickly identify clinically significant findings without the need to review detailed sections of reports. This study proposes RadBARTsum, a domain-specific and ontology…

计算与语言 · 计算机科学 2024-06-06 Jinge Wu , Abul Hasan , Honghan Wu

Medical entity linking is the task of identifying and standardizing medical concepts referred to in an unstructured text. Most of the existing methods adopt a three-step approach of (1) detecting mentions, (2) generating a list of candidate…

计算与语言 · 计算机科学 2021-08-24 Shikhar Vashishth , Denis Newman-Griffis , Rishabh Joshi , Ritam Dutt , Carolyn Rose

We introduce extreme summarization, a new single-document summarization task which does not favor extractive strategies and calls for an abstractive modeling approach. The idea is to create a short, one-sentence news summary answering the…

计算与语言 · 计算机科学 2018-08-28 Shashi Narayan , Shay B. Cohen , Mirella Lapata