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2D single-slice abdominal computed tomography (CT) enables the assessment of body habitus and organ health with low radiation exposure. However, single-slice data necessitates the use of 2D networks for segmentation, but these networks…

Segmentation in 3D scans is playing an increasingly important role in current clinical practice supporting diagnosis, tissue quantification, or treatment planning. The current 3D approaches based on convolutional neural networks usually…

计算机视觉与模式识别 · 计算机科学 2019-03-12 Alexey Novikov , David Major , Maria Wimmer , Dimitrios Lenis , Katja Bühler

There has been a significant increase from 2010 to 2016 in the number of people suffering from spine problems. The automatic image segmentation of the spine obtained from a computed tomography (CT) image is important for diagnosing spine…

计算机视觉与模式识别 · 计算机科学 2017-12-06 Malinda Vania , Dawit Mureja , Deukhee Lee

Background: Large foundation models have revolutionized single-cell analysis, yet no kidney-specific model currently exists, and it remains unclear whether organ-focused models can outperform generalized models. The kidney's complex…

We present a novel method for characterizing the microstructure of a material from volumetric datasets such as 3D image data from computed tomography (CT). The method is based on a new statistical model for the distribution of voxel…

材料科学 · 物理学 2021-01-06 Elise Otterlei Brenne , Vedrana Andersen Dahl , Peter Stanley Jørgensen

Liver lesion segmentation is a difficult yet critical task for medical image analysis. Recently, deep learning based image segmentation methods have achieved promising performance, which can be divided into three categories: 2D, 2.5D and…

计算机视觉与模式识别 · 计算机科学 2019-03-29 Xueying Chen , Rong Zhang , Pingkun Yan

Kidney stones can cause severe pain and complications such as chronic kidney disease or kidney failure. Retrograde intrarenal surgery (RIRS), which uses laser lithotripsy to fragment stones for removal via a ureteroscope, is widely adopted…

应用物理 · 物理学 2025-04-17 Yilong Chang , Jasmine Vallejo , Yangqing Sun , Ruike Renee Zhao

The relationship between RNA structure and function has recently attracted interest within the deep learning community, a trend expected to intensify as nucleic acid structure models advance. Despite this momentum, the lack of standardized,…

生物大分子 · 定量生物学 2025-10-23 Luis Wyss , Vincent Mallet , Wissam Karroucha , Karsten Borgwardt , Carlos Oliver

Automated medical image segmentation is a priority research area for computational methods. In particular, detection of cancerous tumors represents a current challenge in this area with potential for real-world impact. This paper describes…

图像与视频处理 · 电气工程与系统科学 2019-11-06 Jamie A. O'Reilly , Manas Sangworasil , Takenobu Matsuura

Accurate segmentation of retinal vessels is a basic step in Diabetic retinopathy(DR) detection. Most methods based on deep convolutional neural network (DCNN) have small receptive fields, and hence they are unable to capture global context…

计算机视觉与模式识别 · 计算机科学 2019-04-12 Yun Jiang , Ning Tan , Tingting Peng , Hai Zhang

The need for CT scan analysis is growing for pre-diagnosis and therapy of abdominal organs. Automatic organ segmentation of abdominal CT scan can help radiologists analyze the scans faster and segment organ images with fewer errors.…

计算机视觉与模式识别 · 计算机科学 2018-03-06 Shima Rafiei , Ebrahim Nasr-Esfahani , S. M. Reza Soroushmehr , Nader Karimi , Shadrokh Samavi , Kayvan Najarian

This article presents an evaluation of biliary tract segmentation methods used for 3D reconstruction, which may be very usefull in various critical interventions, such as endoscopic retrograde cholangiopancreatography (ERCP), using the 3D…

Kidney DCE-MRI aims at both qualitative assessment of kidney anatomy and quantitative assessment of kidney function by estimating the tracer kinetic (TK) model parameters. Accurate estimation of TK model parameters requires an accurate…

机器学习 · 计算机科学 2022-01-03 Aziz Koçanaoğulları , Cemre Ariyurek , Onur Afacan , Sila Kurugol

Automatic medical image segmentation based on Computed Tomography (CT) has been widely applied for computer-aided surgery as a prerequisite. With the development of deep learning technologies, deep convolutional neural networks (DCNNs) have…

图像与视频处理 · 电气工程与系统科学 2021-04-09 Wenqiang Li , YM Tang , Ziyang Wang , KM Yu , Sandy To

Manual rib inspections in computed tomography (CT) scans are clinically critical but labor-intensive, as 24 ribs are typically elongated and oblique in 3D volumes. Automatic rib segmentation methods can speed up the process through rib…

图像与视频处理 · 电气工程与系统科学 2021-10-01 Jiancheng Yang , Shixuan Gu , Donglai Wei , Hanspeter Pfister , Bingbing Ni

Liver cirrhosis, a leading cause of global mortality, requires precise segmentation of ROIs for effective disease monitoring and treatment planning. Existing segmentation models often fail to capture complex feature interactions and…

计算机视觉与模式识别 · 计算机科学 2024-08-09 Vandan Gorade , Onkar Susladkar , Gorkem Durak , Elif Keles , Ertugrul Aktas , Timurhan Cebeci , Alpay Medetalibeyoglu , Daniela Ladner , Debesh Jha , Ulas Bagci

Layer segmentation is important to quantitative analysis of retinal optical coherence tomography (OCT). Recently, deep learning based methods have been developed to automate this task and yield remarkable performance. However, due to the…

图像与视频处理 · 电气工程与系统科学 2023-12-07 Hong Liu , Dong Wei , Donghuan Lu , Xiaoying Tang , Liansheng Wang , Yefeng Zheng

Motivated by the challenging segmentation task of pancreatic tubular networks, this paper tackles two commonly encountered problems in biomedical imaging: Topological consistency of the segmentation, and expensive or difficult annotation.…

计算机视觉与模式识别 · 计算机科学 2023-06-29 Kasra Arnavaz , Oswin Krause , Kilian Zepf , Jelena M. Krivokapic , Silja Heilmann , Jakob Andreas Bærentzen , Pia Nyeng , Aasa Feragen

Tissue examination and quantification in a 3D context on serial section whole slide images (WSIs) were laborintensive and time-consuming tasks. Our previous study proposed a novel registration-based method (Map3D) to automatically align…

图像与视频处理 · 电气工程与系统科学 2023-05-23 Peize Li , Ruining Deng , Yuankai Huo

The burgeoning need for kidney transplantation mandates immediate attention. Mismatch of deceased donor-recipient kidney leads to post-transplant death. To ensure ideal kidney donor-recipient match and minimize post-transplant deaths, the…

计算机与社会 · 计算机科学 2019-08-22 Ehsan Khan , Avishek Choudhury , Amy L Friedman , Daehan Won