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In this study, we present a graph neural network-based learning approach using an autoencoder setup to derive low-dimensional variables from features observed in experimental crystal structures. These variables are then biased in enhanced…

统计力学 · 物理学 2023-10-13 Ziyue Zou , Pratyush Tiwary

The quasiparticle method, which has achieved a great success in solid state electronics and crystal lattice vibration, is adopted to study the solid state ion transport. A general recipe is put forward to map the classical solid state ion…

材料科学 · 物理学 2024-02-13 Jiaming Hu

Node-link diagrams are a popular method for representing graphs that capture relationships between individuals, businesses, proteins, and telecommunication endpoints. However, node-link diagrams may fail to convey insights regarding graph…

社会与信息网络 · 计算机科学 2023-09-20 Paul Rosen , Mustafa Hajij , Bei Wang

Many processes in chemistry, physics, and biology involve rare events in which the system escapes from a metastable state by surmounting an activation barrier. Examples range from chemical reactions, protein folding, and nucleation events…

化学物理 · 物理学 2020-10-07 Niels Zijlstra , Daniel Nettels , Rohit Satija , Dmitrii E. Makarov , Benjamin Schuler

Crystal structures are characterized by atomic bases within a primitive unit cell that repeats along a regular lattice throughout 3D space. The periodic and infinite nature of crystals poses unique challenges for geometric graph…

机器学习 · 计算机科学 2024-03-19 Keqiang Yan , Cong Fu , Xiaofeng Qian , Xiaoning Qian , Shuiwang Ji

This work presents a fast and scalable approach for predicting surface stability and equilibrium crystal morphology in ionic materials using electrostatic analysis. The method constructs stoichiometric slab terminations and evaluates their…

材料科学 · 物理学 2026-04-30 Sourav Baiju , Payam Kaghazchi

Trapped atomic ions have become one of the most promising architectures for a quantum computer, and current effort is now devoted to the transport of trapped ions through complex segmented ion trap structures in order to scale up to much…

量子物理 · 物理学 2008-02-20 D. Hucul , M. Yeo , W. K. Hensinger , J. Rabchuk , S. Olmschenk , C. Monroe

Graph filters are a staple tool for processing signals over graphs in a multitude of downstream tasks. However, they are commonly designed for graphs with a fixed number of nodes, despite real-world networks typically grow over time. This…

机器学习 · 计算机科学 2024-09-12 Bishwadeep Das , Elvin Isufi

Dielectric microstructures have been reported to have negative influences on perm-selective ion transportation because ions do not migrate in areas where the structures are located. However, the structure can promote the transportation if…

应用物理 · 物理学 2019-11-05 Keon Huh , So-Yoon Yang , Jae Suk Park , Jung A Lee , Hyomin Lee , Sung Jae Kim

Understanding mechanisms of ion transport in bulk materials is central to designing next-generation ion conductors for energy storage devices, yet studies employing all-atom molecular dynamics (MD) have largely been limited to reporting…

材料科学 · 物理学 2026-02-19 KyuJung Jun , Pablo A. Leon , Jurğis Ruža , Juno Nam , Rafael Gómez-Bombarelli

We present a novel framework based on optimal transport for the challenging problem of comparing graphs. Specifically, we exploit the probabilistic distribution of smooth graph signals defined with respect to the graph topology. This allows…

机器学习 · 计算机科学 2019-12-09 Hermina Petric Maretic , Mireille EL Gheche , Giovanni Chierchia , Pascal Frossard

Many network analysis and graph learning techniques are based on models of random walks which require to infer transition matrices that formalize the underlying stochastic process in an observed graph. For weighted graphs, it is common to…

统计方法学 · 统计学 2022-10-28 Vincenzo Perri , Luka V. Petrović , Ingo Scholtes

We provide a data structure for maintaining an embedding of a graph on a surface (represented combinatorially by a permutation of edges around each vertex) and computing generators of the fundamental group of the surface, in amortized time…

数据结构与算法 · 计算机科学 2007-05-23 David Eppstein

There has been a recent surge of interest in using machine learning to approximate density functional theory (DFT) in materials science. However, many of the most performant models are evaluated on large databases of computed properties of,…

材料科学 · 物理学 2021-07-02 Filip Ekström , Rickard Armiento , Fredrik Lindsten

We simulate structure in the vicinity of different size nanovoids using a new variant of the Molecular Statics, wherein atomic structure in the vicinity of nanovoids and the parameters that define the displacements of atoms placed in…

材料科学 · 物理学 2022-02-02 A. V. Nazarov , A. P. Melnikov , A. A. Mikheev , I. V. Ershova

We study the urban-scale macroscopic traffic flow in city networks. Star graph is considered as traffic network. Star graphs with controlled traffic flow are transformed to various cell-transmission graphs by using the cell transmission…

适应与自组织系统 · 物理学 2019-12-10 Takashi Nagatani

Drag and diffusion of mobile ions in solids are of interest for both purely theoretical and applied scientific communities. This article proposes a theoretical description of ion drag in solids that can be used to estimate ionic…

介观与纳米尺度物理 · 物理学 2022-06-24 Aleksandr Rodin , Keian Noori , Alexandra Carvalho , Antonio Helio Castro Neto

When ions move through solids, they interact with the solid's constituent atoms and cause them to vibrate around their equilibrium points. This vibration, in turn, modifies the potential landscape through which the mobile ions travel.…

材料科学 · 物理学 2024-07-03 A. Rodin , B. A. Olsen , A. Ustyuzhanin , A. Maevskiy , K. Noori

Introduction: molecular geometry, the three-dimensional arrangement of atoms within a molecule, is fundamental to understanding chemical reactivity, physical properties, and biological activity. The prevailing models used to describe…

综合物理 · 物理学 2026-05-12 Sebastian Ali Sacasa-Cespedes

Graphs are widely used for modeling various types of interactions, such as email communications and online discussions. Many of such real-world graphs are temporal, and specifically, they grow over time with new nodes and edges. Counting…

社会与信息网络 · 计算机科学 2023-01-04 Deukryeol Yoon , Dongjin Lee , Minyoung Choe , Kijung Shin