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Motivation: Machine learning based prediction of compound-protein interactions (CPIs) is important for drug design, screening and repurposing studies and can improve the efficiency and cost-effectiveness of wet lab assays. Despite the…

定量方法 · 定量生物学 2022-02-02 Adiba Yaseen , Imran Amin , Naeem Akhter , Asa Ben-Hur , Fayyaz Minhas

Although review papers on causal inference methods are now available, there is a lack of introductory overviews on what they can render and on the guiding criteria for choosing one particular method. This tutorial gives an overview in…

统计方法学 · 统计学 2019-07-01 Els Goetghebeur , Saskia le Cessie , Bianca De Stavola , Erica Moodie , Ingeborg Waernbaum

Increasingly multi-purpose AI models, such as cutting-edge large language models or other 'general-purpose AI' (GPAI) models, 'foundation models,' generative AI models, and 'frontier models' (typically all referred to hereafter with the…

Representational similarity metrics are fundamental tools in neuroscience and AI, yet we lack systematic comparisons of their discriminative power across model families. We introduce a quantitative framework to evaluate representational…

机器学习 · 计算机科学 2025-12-10 Jialin Wu , Shreya Saha , Yiqing Bo , Meenakshi Khosla

Intelligent agents must be able to articulate its own uncertainty. In this work, we show that pre-trained sequence models are naturally capable of probabilistic reasoning over exchangeable data points -- forming informed beliefs and…

机器学习 · 统计学 2024-12-02 Naimeng Ye , Hongseok Namkoong

Neural Temporal Point Processes (TPPs) have emerged as the primary framework for predicting sequences of events that occur at irregular time intervals, but their sequential nature can hamper performance for long-horizon forecasts. To…

机器学习 · 计算机科学 2024-07-23 Mai Zeng , Florence Regol , Mark Coates

This work proposes a time series prediction method based on the kernel view of linear reservoirs. In particular, the time series motifs of the reservoir kernel are used as representational basis on which general readouts are constructed. We…

机器学习 · 计算机科学 2024-12-05 Peter Tino , Robert Simon Fong , Roberto Fabio Leonarduzzi

Machine learning (ML) models for predicting gas permeability through polymers have traditionally relied on experimental data. While these models exhibit robustness within familiar chemical domains, reliability wanes when applied to new…

材料科学 · 物理学 2024-06-24 Brandon K. Phan , Kuan-Hsuan Shen , Rishi Gurnani , Huan Tran , Ryan Lively , Rampi Ramprasad

Using the linear Gaussian latent variable model as a starting point we relax some of the constraints it imposes by deriving a nonparametric latent feature Gaussian variable model. This model introduces additional discrete latent variables…

机器学习 · 统计学 2019-05-28 Adam Farooq , Yordan P. Raykov , Luc Evers , Max A. Little

In Positional-Slotted Object-Applicative (PSOA) RuleML, a predicate application (atom) can have an Object IDentifier (OID) and descriptors that may be positional arguments (tuples) or attribute-value pairs (slots). PSOA RuleML explicitly…

人工智能 · 计算机科学 2019-07-23 Harold Boley , Gen Zou

Medical errors are leading causes of death in the US and as such, prevention of these errors is paramount to promoting health care. Patient Safety Event reports are narratives describing potential adverse events to the patients and are…

计算与语言 · 计算机科学 2017-02-24 Arman Cohan , Allan Fong , Nazli Goharian , Raj Ratwani

There has been increased interest in using prior information in statistical analyses. For example, in rare diseases, it can be difficult to establish treatment efficacy based solely on data from a prospective study due to low sample sizes.…

统计方法学 · 统计学 2021-07-26 Ethan M. Alt , Matthew A. Psioda , Joseph G. Ibrahim

openCOSMO-RS is an open-source predictive thermodynamic model that can be applied to a broad range of systems in various chemical and biochemical engineering domains. This study focuses on improving openCOSMO-RS by introducing a new…

We show that a Gaussian Process model can be combined with a small number (of order 100) of scattering calculations to provide a multi-dimensional dependence of scattering observables on the experimentally controllable parameters such as…

化学物理 · 物理学 2015-08-19 Jie Cui , Roman V. Krems

Reinforcement learning enhances the reasoning capabilities of large language models but often involves high computational costs due to rollout-intensive optimization. Online prompt selection presents a plausible solution by prioritizing…

人工智能 · 计算机科学 2026-05-18 Yun Qu , Qi Wang , Yixiu Mao , Heming Zou , Yuhang Jiang , Weijie Liu , Clive Bai , Kai Yang , Yangkun Chen , Saiyong Yang , Xiangyang Ji

Many scientific fields, from medicine to seismology, rely on analyzing sequences of events over time to understand complex systems. Traditionally, machine learning models must be built and trained from scratch for each new dataset, which is…

机器学习 · 计算机科学 2026-01-21 David Berghaus , Patrick Seifner , Kostadin Cvejoski , Ramses J. Sanchez

The rapid advancements in artificial intelligence (AI) are catalyzing transformative changes in atomic modeling, simulation, and design. AI-driven potential energy models have demonstrated the capability to conduct large-scale,…

We study the use of exchangeable multi-task Gaussian processes (GPs) for causal inference in panel data, applying the framework to two settings: one with a single treated unit subject to a once-and-for-all treatment and another with…

统计方法学 · 统计学 2026-02-25 Hayk Gevorgyan , Konstantinos Kalogeropoulos , Angelos Alexopoulos

We consider event-driven clinical trials, where the analysis is performed once a pre-determined number of clinical events has been reached. For example, these events could be progression in oncology or a stroke in cardiovascular trials. At…

统计方法学 · 统计学 2021-08-23 Vladimir Anisimov , Stephen Gormley , Rosalind Baverstock , Cynthia Kineza

One of the fundamental challenges in drawing causal inferences from observational studies is that the assumption of no unmeasured confounding is not testable from observed data. Therefore, assessing sensitivity to this assumption's…

统计方法学 · 统计学 2024-06-25 Md Abdul Basit , Mahbub A. H. M. Latif , Abdus S Wahed