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The minimal 3-state scheme of kinetic cooperativity of monomeric enzymes is subjected to detailed analysis. The rigorous criteria of positive cooperativity and its sigmoidal version are established in terms of the system parameters (rate…

生物物理 · 物理学 2023-10-25 Leonid Christophorov

Stochastic and coherence resonances appear in nonlinear systems subjected to an external source of noise and are characterized by a maximum response at the optimal value of the noise intensity. This paper shows experimentally that it is…

凝聚态物理 · 物理学 2016-08-31 O. Calvo , I. Gomes , C. R. Mirasso , R. Toral

We show that noise-induced oscillations in a gene circuit model display stochastic coherence, that is, a maximum in the regularity of the oscillations as a function of noise amplitude. The effect is manifest as a system-size effect in a…

分子网络 · 定量生物学 2009-08-05 Robert C. Hilborn , Jessie D. Erwin

We study a reaction model that presents stochastic resonance purely due to internal noise. This means that the only source of fluctuations comes from the discrete character of the reactants, and no more noises enter into the system. Our…

统计力学 · 物理学 2009-11-11 Carlos Escudero

It is shown that coherence resonance, a phenomenon in which regularity of noise-induced oscillations in nonlinear excitable systems is maximized at a certain optimal noise intensity, can be observed in quantum dissipative systems. We…

适应与自组织系统 · 物理学 2021-04-12 Yuzuru Kato , Hiroya Nakao

Several studies have developed dynamical models to understand the underlying mechanisms of insulin signaling, a signaling cascade that leads to the translocation of glucose, the human body's main source of energy. Fortunately, reaction…

分子网络 · 定量生物学 2023-10-25 Patrick Vincent N. Lubenia , Eduardo R. Mendoza , Angelyn R. Lao

The magnetic susceptibility measured in neutron scattering experiments in underdoped YBa$_2$Cu$_3$O$_{7-y}$ is interpreted based on the self-consistent solution of the t-J model of a Cu-O plane. The calculations reproduce correctly the…

强关联电子 · 物理学 2009-11-10 A. Sherman , M. Schreiber

We discuss in detail a human scale example of the synchronization phenomenon, namely the dynamics of the rhythmic applause. After a detailed experimental investigation, we describe the phenomenon with an approach based on the classical…

统计力学 · 物理学 2009-10-31 Z. Neda , E. Ravasz , T. Vicsek , Y. Brechet , A. L. Barabasi

We study the influence of correlations among discrete stochastic excitatory or inhibitory inputs on the response of the FitzHugh-Nagumo neuron model. For any level of correlation the emitted signal exhibits at some finite noise intensity a…

无序系统与神经网络 · 物理学 2007-05-23 Thomas Kreuz , Stefano Luccioli , Alessandro Torcini

The goal of this paper is to outline a scenario of emerging stochasticity in high-dimensional highly nonlinear systems, such as genetic regulatory networks (GRN). We focus attention on the fact that in such systems confluence of all the…

分子网络 · 定量生物学 2007-09-19 Simon Rosenfeld

Stochastic kinetic models of genetic expression are able to describe protein fluctuations. A comparative study of the canonical and a feedback model is given here by using stochastic simulation methods. The feedback model is skeleton model…

分子网络 · 定量生物学 2018-09-06 Raoul R. Wadhwa , Laszlo Zalanyi , Judit Szente , Laszlo Negyessy , Peter Erdi

Cooperative interactions among the binding of multiple signaling molecules is a common mechanism for enhancing the sensitivity of biological signaling systems. It is widely assumed that this increase in sensitivity of the mean response…

分子网络 · 定量生物学 2007-05-23 William Bialek , Sima Setayeshgar

A long standing debate in biochemistry is to determine whether the conformational changes observed during biomolecular interactions proceed through conformational selection (of preexisting isoforms) or induced fit (ligand-induced 3D…

分子网络 · 定量生物学 2016-09-28 Denis Michel

The mechanism of high-Tc superconductivity is investigated with interests on the microscopic aspects of the condensation energy. The theoretical analysis is performed on the basis of the FLEX approximation which is a microscopic description…

超导电性 · 物理学 2009-11-10 Youichi Yanase , Masao Ogata

The standard two-step model of homogeneous-catalyzed reactions had been theoretically analyzed at various levels of approximations from time to time. The primary aim was to check the validity of the quasi-steady-state approximation, and…

化学物理 · 物理学 2019-11-14 Kamal Bhattacharyya , Sharmistha Dhatt

The system discussed recently in L. Cao and D. J. Wu, Europhys. Lett. {\bf 61}, (2003) 593 merely reproduces properties of the input signal.

统计力学 · 物理学 2007-05-23 P. F. Gora

The coherence resonance (CR) of globally coupled Hodgkin-Huxley neurons is studied. When the neurons are set in the subthreshold regime near the firing threshold, the additive noise induces limit cycles. The coherence of the system is…

生物物理 · 物理学 2009-10-31 Yuqing Wang , David T. W. Chik , Z. D. Wang

We report a novel theoretical approach on the microwave-induced resistance oscillations based on the coherent states of the quantum harmonic oscillator. We first obtain an expression for the coherent states of driven-quantum harmonic…

介观与纳米尺度物理 · 物理学 2023-06-22 Jesus Inarrea

We study the relationship between the collective phenomena of super and subradiance and spontaneous synchronization of quantum systems. To this aim we revisit the case of two detuned qubits interacting through a pure dissipative bosonic…

量子物理 · 物理学 2017-04-17 B. Bellomo , G. L. Giorgi , G. M. Palma , R. Zambrini

The peculiarities of coherent spin radiation by magnetic nanomolecules is investigated by means of numerical simulation. The consideration is based on a microscopic Hamiltonian taking into account realistic dipole interactions.…

介观与纳米尺度物理 · 物理学 2015-05-13 V. I. Yukalov , V. K. Henner , P. V. Kharebov , E. P. Yukalova
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