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Vesicle budding induced by protein binding that generates an isotropic spontaneous curvature is studied using a mean-field theory. Many spherical buds are formed via protein binding. As the binding chemical potential increases, the proteins…

软凝聚态物质 · 物理学 2021-07-30 Hiroshi Noguchi

We review the theoretical analyses and simulations of the interactions between curvature-inducing proteins and biomembranes. Laterally isotropic proteins induce spherical budding, whereas anisotropic proteins, such as Bin/Amphiphysin/Rvs…

软凝聚态物质 · 物理学 2023-03-10 Hiroshi Noguchi

Bin/Amphiphysin/Rvs superfamily proteins and other curvature-inducing proteins have anisotropic shapes and anisotropically bend biomembrane. Here, we report how the anisotropic proteins bind the membrane tube and are orientationally ordered…

软凝聚态物质 · 物理学 2022-05-09 Hiroshi Noguchi , Caterina Tozzi , Marino Arroyo

Many types of peripheral and transmembrane proteins can sense and generate membrane curvature. Laterally isotropic proteins and crescent proteins with twofold rotational symmetry, such as Bin/Amphiphysin/Rvs superfamily proteins, have been…

软凝聚态物质 · 物理学 2024-02-12 Hiroshi Noguchi

The curvature sensitive localization of proteins on membranes is vital for many cell biological processes. Coarse-grained models are routinely employed to study the curvature sensing phenomena and membrane morphology at the length scale of…

软凝聚态物质 · 物理学 2019-10-22 T. V. Sachin Krishnan , Sovan L. Das , P. B. Sunil Kumar

Plasma membrane tubes are ubiquitous in cellular membranes and in the membranes of intracellular organelles. They play crucial roles in trafficking, ion transport, and cellular motility. The formation of plasma membrane tubes can be due to…

软凝聚态物质 · 物理学 2022-06-09 Arijit Mahapatra , Padmini Rangamani

The detachment dynamics of a fluid membrane with an isotropic spontaneous curvature from a flat substrate are studied by using meshless membrane simulations. The membrane is detached from an open edge leading to vesicle formation. With…

软凝聚态物质 · 物理学 2019-11-11 Hiroshi Noguchi

Curvature in biological membranes can be generated by a variety of different molecular mechanisms such as protein scaffolding, lipid or protein asymmetry, cytoskeletal forces, etc. These mechanisms have the net effect of generating stresses…

Cell adhesion proteins typically form stable clusters that anchor the cell membrane to its environment. Several works have suggested that cell membrane protein clusters can emerge from a local feedback between the membrane curvature and the…

软凝聚态物质 · 物理学 2023-08-16 Shao-Zhen Lin , Jacques Prost , Jean-Francois Rupprecht

Eukaryote cells have a flexible shape, which dynamically changes according to the function performed by the cell. One mechanism for deforming the cell membrane into the desired shape is through the expression of curved membrane proteins.…

生物物理 · 物理学 2018-12-05 Miha Fošnarič , Samo Penič , Aleš Iglič , Veronika Kralj-Iglič , Mitja Drab , Nir Gov

The assembly of curved protein rods on fluid membranes is studied using implicit-solvent meshless membrane simulations. As the rod curvature increases, the rods on a membrane tube assemble along the azimuthal direction first and…

软凝聚态物质 · 物理学 2016-05-18 Hiroshi Noguchi

Membrane proteins are crucial in regulating biomembrane shapes and controlling the dynamic changes in membrane morphology during essential cellular processes. These proteins can localize to regions with their preferred curvatures (curvature…

软凝聚态物质 · 物理学 2025-05-26 Hiroshi Noguchi

The Bin/amphiphysin/Rvs (BAR) superfamily proteins have a crescent binding domain and bend biomembranes along the domain axis. However, their anisotropic bending rigidities and spontaneous curvatures have not been experimentally determined.…

软凝聚态物质 · 物理学 2023-07-28 Hiroshi Noguchi , Nikhil Walani , Marino Arroyo

Induced by proteins within the cell membrane or by differential growth, heating, or swelling, spontaneous curvatures can drastically affect the morphology of thin bodies and induce mechanical instabilities. Yet, the interaction of…

软凝聚态物质 · 物理学 2018-01-31 Matteo Pezzulla , Norbert Stoop , Mark P. Steranka , Abdikhalaq J. Bade , Douglas P. Holmes

Several numerical methods for measuring the bending rigidity and the spontaneous curvature of fluid membranes are studied using two types of meshless membrane models. The bending rigidity is estimated from the thermal undulations of planar…

软凝聚态物质 · 物理学 2011-11-16 Hayato Shiba , Hiroshi Noguchi

There are a great many proteins that localize to and collectively generate curvature in biological fluid membranes. We study changes in the topology of fluid membranes due to the presence of highly anisotropic, curvature-inducing proteins.…

软凝聚态物质 · 物理学 2015-05-19 Kiyotaka Akabori , C. D. Santangelo

The assembly of banana-shaped rodlike proteins on membranes, and the associated membrane shape transformations, are investigated by analytical theory and coarse-grained simulations. The membrane-mediated interactions between two…

软凝聚态物质 · 物理学 2017-05-15 Hiroshi Noguchi , Jean-Baptiste Fournier

The shape transformations of fluid membranes induced by curved protein rods are studied using meshless membrane simulations. The rod assembly at low rod density induces a flat membrane tube and oblate vesicle. It is found that the…

软凝聚态物质 · 物理学 2015-09-30 Hiroshi Noguchi

We consider the lateral diffusion of a protein interacting with the curvature of the membrane. The interaction energy is minimized if the particle is at a membrane position with a certain curvature that agrees with the spontaneous curvature…

软凝聚态物质 · 物理学 2008-12-10 Stefan M. Leitenberger , Ellen Reister-Gottfried , Udo Seifert

Spatial organisation is a hallmark of all living cells, and recreating it in model systems is a necessary step in the creation of synthetic cells. It is therefore of both fundamental and practical interest to better understand the basic…

生物物理 · 物理学 2017-12-19 Jaime Agudo-Canalejo , Ramin Golestanian
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